y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g028392m |
Family | CBM43 |
Protein Properties | Length: 210 Molecular Weight: 20966.3 Isoelectric Point: 6.8691 |
Chromosome | Chromosome/Scaffold: 00122 Start: 417334 End: 421653 |
Description | plasmodesmata callose-binding protein 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 21 | 103 | 1.1e-34 |
WCVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGCS |
Full Sequence |
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Protein Sequence Length: 210 Download |
MAVLVLLALF LGFTGHSTAN WCVCKDGVGD PVLQKALDYA CGAGADCNPI HSNGPCYNPN 60 TVKAHCSYAV NSYFQRKGQA QGSCDFSGSA TVATTDPSTA GCSYPSSAST SGTTTTSPTT 120 PVTGTPGTTT PTTTPSTTTP TTNTPGSTTP YTTTPSTGTG VLGGVGPGLG PSGSGMPNTD 180 YSHGGMRLQN SALSFLVVLL FSGSMLLWG* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 6.0e-23 | 21 | 91 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-37 | 21 | 102 | 82 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK92735.1 | 0 | 1 | 208 | 1 | 208 | unknown [Populus trichocarpa] |
GenBank | ABK93473.1 | 0 | 14 | 206 | 14 | 211 | unknown [Populus trichocarpa] |
RefSeq | NP_564059.1 | 0 | 1 | 199 | 1 | 174 | PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3); callose binding / polysaccharide binding [Arabidopsis thaliana] |
RefSeq | XP_002284112.1 | 0 | 1 | 209 | 1 | 207 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002514663.1 | 0 | 1 | 209 | 1 | 215 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-22 | 21 | 106 | 13 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |