y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si023035m |
Family | CBM43 |
Protein Properties | Length: 254 Molecular Weight: 25653.6 Isoelectric Point: 6.0667 |
Chromosome | Chromosome/Scaffold: 3 Start: 9198016 End: 9199589 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 84 | 166 | 6.9e-36 |
WCVASPSASSTSLQVALDYACGQGGADCSAIQQGGSCFNPDTVRDHASYAFNSYYQKNPVQTSCDFGGTAVLTSTNPSTSTCQ |
Full Sequence |
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Protein Sequence Length: 254 Download |
MEGLRQGHWL ASLLAVLLFC HARGSEQRPA EHAKPGRAAD MPERDVTSPL ATVPVVTPTV 60 TTPTAMPTAT PATQTPSLAS GGSWCVASPS ASSTSLQVAL DYACGQGGAD CSAIQQGGSC 120 FNPDTVRDHA SYAFNSYYQK NPVQTSCDFG GTAVLTSTNP STSTCQYPAT STGASVLNTS 180 TPLTPTYGSP PGGYGSSPPA GYGNSPPLYG SMSPPDYGGE ISAAAVTVPG SKKTTPILSL 240 TTCLLVVTLT LAG* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-22 | 83 | 154 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-39 | 83 | 167 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79758.1 | 0 | 42 | 251 | 52 | 269 | hypothetical protein OsI_21142 [Oryza sativa Indica Group] |
GenBank | EEE64827.1 | 0 | 42 | 251 | 52 | 269 | hypothetical protein OsJ_19684 [Oryza sativa Japonica Group] |
RefSeq | NP_001056434.1 | 0 | 42 | 251 | 52 | 279 | Os05g0581900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001131448.1 | 0 | 24 | 251 | 25 | 293 | hypothetical protein LOC100192780 [Zea mays] |
RefSeq | XP_002441577.1 | 0 | 4 | 251 | 3 | 242 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-22 | 72 | 172 | 1 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |