y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g040368m |
Family | CBM43 |
Protein Properties | Length: 246 Molecular Weight: 26118.7 Isoelectric Point: 9.4191 |
Chromosome | Chromosome/Scaffold: 00036 Start: 923392 End: 924129 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 170 | 246 | 8.1e-34 |
WCVAKPTVPDSIIQEAMDYACGTGADCKPIQTNGSCFQPNTLVAHASYAFNSYWQKTKNRGGTCDFGGIAMLVTTDP |
Full Sequence |
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Protein Sequence Length: 246 Download |
ARHVVQFSSF QGPEFSRNSI HKPMKKPKLS SRVNIHKNFY LSRAESNGLS APFSFPPLES 60 IAPLSSPHNN IPAPFCIYPP STPNLPFQSP PGVSPGLSPP STGVPAVSPG LSPPQYVPSP 120 PSTGTRTPPP YGPSPPKLAP GSPVYQPPMA HPPPAGPPPP PHQNPRFPVW CVAKPTVPDS 180 IIQEAMDYAC GTGADCKPIQ TNGSCFQPNT LVAHASYAFN SYWQKTKNRG GTCDFGGIAM 240 LVTTDP 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-27 | 170 | 240 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-39 | 170 | 246 | 77 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78496.1 | 0 | 1 | 246 | 32 | 252 | hypothetical protein [Vitis vinifera] |
EMBL | CBI34142.1 | 0 | 1 | 246 | 23 | 243 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264622.1 | 0 | 1 | 246 | 32 | 252 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307863.1 | 4.99983e-42 | 170 | 246 | 1 | 77 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520569.1 | 1.4013e-45 | 99 | 246 | 94 | 239 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 8e-18 | 170 | 246 | 13 | 89 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG665507 | 78 | 169 | 246 | 4.00001e-41 |
EG679312 | 78 | 169 | 246 | 9.99995e-41 |
CK096422 | 78 | 169 | 246 | 3e-40 |
EG679311 | 78 | 169 | 246 | 7e-40 |
CV259076 | 78 | 169 | 246 | 1e-39 |
Sequence Alignments (This image is cropped. Click for full image.) |
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