y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00007493m |
Family | CBM43 |
Protein Properties | Length: 194 Molecular Weight: 18847.2 Isoelectric Point: 5.5352 |
Chromosome | Chromosome/Scaffold: 044192 Start: 1044 End: 4548 |
Description | plasmodesmata callose-binding protein 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 21 | 103 | 7.4e-33 |
WCVCRQDAPQASLQKTIDYACGAGADCNSIHENGPCYNPNNVPAHCSWAANSYYQNNKAKGATCDFTGTATLTTSDPSSSGCS |
Full Sequence |
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Protein Sequence Length: 194 Download |
MKALVVAVLL LLSSTLAASQ WCVCRQDAPQ ASLQKTIDYA CGAGADCNSI HENGPCYNPN 60 NVPAHCSWAA NSYYQNNKAK GATCDFTGTA TLTTSDPSSS GCSFPTSASA VGTMTPTTGG 120 TMGGTPGTGT FTPGAGTTGT GMGTGSTTGT TGTGLGLGPA GIGAGMDTAA AGLLPRADLV 180 AVLTVLLPAI AFA* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-20 | 20 | 91 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-35 | 20 | 104 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF83296.1 | 0 | 20 | 176 | 20 | 179 | unknown [Zea mays] |
GenBank | ACG46419.1 | 0 | 20 | 114 | 20 | 114 | glucan endo-1,3-beta-glucosidase 3 precursor [Zea mays] |
GenBank | EAZ04609.1 | 0 | 4 | 193 | 2 | 191 | hypothetical protein OsI_26758 [Oryza sativa Indica Group] |
RefSeq | NP_001060198.1 | 0 | 12 | 193 | 13 | 194 | Os07g0600700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002460971.1 | 0 | 1 | 110 | 1 | 110 | hypothetical protein SORBIDRAFT_02g038510 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5e-17 | 17 | 106 | 9 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |