y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00021112m |
Family | CBM43 |
Protein Properties | Length: 123 Molecular Weight: 12493.8 Isoelectric Point: 4.8344 |
Chromosome | Chromosome/Scaffold: 0140720 Start: 2038 End: 2928 |
Description | plasmodesmata callose-binding protein 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 22 | 105 | 2.6e-33 |
WCVCRPDATDAALQRTLDYACGHGADCAAVLPTGPCYSPTSVRAHCSYAANSYFQRNSQANGATCDFGGTANLTDTDPSSGTCK |
Full Sequence |
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Protein Sequence Length: 123 Download |
MATLVLLLLL LAMAFRGSDG SWCVCRPDAT DAALQRTLDY ACGHGADCAA VLPTGPCYSP 60 TSVRAHCSYA ANSYFQRNSQ ANGATCDFGG TANLTDTDPS SGTCKYPATP SEAGASGNAT 120 GTG 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-19 | 21 | 92 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-34 | 21 | 106 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC71533.1 | 0 | 13 | 109 | 15 | 111 | hypothetical protein OsI_03847 [Oryza sativa Indica Group] |
RefSeq | NP_001044338.1 | 0 | 13 | 116 | 15 | 118 | Os01g0763900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001056023.1 | 3e-37 | 17 | 111 | 16 | 109 | Os05g0512600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151015.1 | 0 | 1 | 123 | 1 | 124 | glucan endo-1,3-beta-glucosidase 1 [Zea mays] |
RefSeq | XP_002458540.1 | 0 | 16 | 123 | 16 | 124 | hypothetical protein SORBIDRAFT_03g035410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-21 | 20 | 108 | 11 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |