y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G157700.1 |
Family | CBM43 |
Protein Properties | Length: 279 Molecular Weight: 28719.2 Isoelectric Point: 4.5811 |
Chromosome | Chromosome/Scaffold: 09 Start: 12098357 End: 12100350 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 112 | 194 | 6.1e-35 |
WCVANQGASPTALQVALDYACGYGGADCSAIQPGASCYEPNTVHDHASYAFNDYYQKHPEPTSCVFGGTAQLTNTDPSNGNCH |
Full Sequence |
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Protein Sequence Length: 279 Download |
MDFGLVQFLT ILLLHLLLCS GSSVSKKPPL QEINQRKQNQ DSRMLLDPSI STTVLDNVPI 60 VNPTTPGTTP NPTSPSTEPI TNPVTPVTTP TAPVTTPTTP TPTPTTSSGG SWCVANQGAS 120 PTALQVALDY ACGYGGADCS AIQPGASCYE PNTVHDHASY AFNDYYQKHP EPTSCVFGGT 180 AQLTNTDPSN GNCHYAASSP TSVTPPASIT PPATLPPPAP TTMTMTPPFP MSPPFTGAGG 240 DSVYGSAEPT GLPSSASCVS FSYLLIFATM SLVAANKL* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-19 | 111 | 181 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-36 | 111 | 195 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94231.1 | 0 | 4 | 274 | 5 | 296 | unknown [Populus trichocarpa] |
EMBL | CBI30817.1 | 1.4013e-45 | 108 | 254 | 31 | 165 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_174231.2 | 4.00001e-41 | 112 | 273 | 148 | 306 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002271903.1 | 0 | 1 | 254 | 1 | 260 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519744.1 | 0 | 17 | 278 | 8 | 282 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-20 | 101 | 199 | 2 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |