y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00012973m |
Family | CBM43 |
Protein Properties | Length: 142 Molecular Weight: 14249.9 Isoelectric Point: 8.3682 |
Chromosome | Chromosome/Scaffold: 019048 Start: 8645 End: 9492 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 55 | 136 | 3.6e-33 |
WCVANPKAASAVVQTAMDYACGSGADCGVASPGGPCYLPDTLVTHASYAFNSYWQRTKAAGGTCDFAGAAMLVTRDPSYDGC |
Full Sequence |
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Protein Sequence Length: 142 Download |
PAGRLAVHRA GHQPAGASPP AGSPSTTPGS SQPRRVHAAG GVPDAPPGQA RPGLWCVANP 60 KAASAVVQTA MDYACGSGAD CGVASPGGPC YLPDTLVTHA SYAFNSYWQR TKAAGGTCDF 120 AGAAMLVTRD PSYDGCRYVY M* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 5.0e-21 | 54 | 125 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-40 | 54 | 138 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD45386.1 | 5e-39 | 48 | 132 | 122 | 207 | hypothetical protein [Oryza sativa Japonica Group] |
GenBank | EAZ01995.1 | 0 | 53 | 141 | 127 | 216 | hypothetical protein OsI_24027 [Oryza sativa Indica Group] |
GenBank | EAZ37928.1 | 0 | 48 | 141 | 122 | 216 | hypothetical protein OsJ_22279 [Oryza sativa Japonica Group] |
RefSeq | XP_002516415.1 | 7e-38 | 54 | 140 | 176 | 262 | conserved hypothetical protein [Ricinus communis] |
RefSeq | XP_002520569.1 | 8e-38 | 53 | 138 | 161 | 246 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5e-17 | 53 | 138 | 11 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL944496 | 95 | 48 | 142 | 0 |
FL476107 | 88 | 55 | 142 | 1e-37 |
DV522213 | 96 | 47 | 142 | 2e-37 |
EG665507 | 86 | 54 | 139 | 2e-37 |
FL734786 | 88 | 55 | 142 | 9e-37 |
Sequence Alignments (This image is cropped. Click for full image.) |
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