y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra032719 |
Family | CBM43 |
Protein Properties | Length: 208 Molecular Weight: 21014.8 Isoelectric Point: 6.7343 |
Chromosome | Chromosome/Scaffold: 04 Start: 5231076 End: 5233117 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 23 | 101 | 1.4e-31 |
WCVARFDVTSQALQAALDYACAAGADCAPIQPTGLCFLPNTIQAHASYAFNSYFQRRAMAPGSCNFAGTSTIAKTDPSI |
Full Sequence |
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Protein Sequence Length: 208 Download |
MALYLQSLSI ILFLLLPSST AMWCVARFDV TSQALQAALD YACAAGADCA PIQPTGLCFL 60 PNTIQAHASY AFNSYFQRRA MAPGSCNFAG TSTIAKTDPS INAGGSASTT TVGGTPTATA 120 GNIPVTSLRP PSGTTASPFG IGGNGLIPPG ITNTDESGAY IINTSSVSIS PWGVASGSLA 180 GHKLVANNIA CNHGGVFLAN YFSETLV* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 8.0e-9 | 23 | 93 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-21 | 23 | 100 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB41118.1 | 0 | 1 | 170 | 39 | 246 | putative protein [Arabidopsis thaliana] |
RefSeq | NP_193096.5 | 0 | 1 | 170 | 39 | 221 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002300169.1 | 3e-39 | 23 | 100 | 2 | 79 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323780.1 | 1e-38 | 23 | 100 | 1 | 78 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518089.1 | 7e-39 | 21 | 100 | 25 | 104 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-20 | 17 | 103 | 7 | 93 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |