y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si012153m |
Family | CBM43 |
Protein Properties | Length: 328 Molecular Weight: 32057.6 Isoelectric Point: 4.6947 |
Chromosome | Chromosome/Scaffold: 7 Start: 29688158 End: 29689179 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 226 | 304 | 8.5e-33 |
WCVAKPTVPDPIIQEAMDYACGSGAECDSIQPTGACYHPNTVLAHASFAFNSYWQQSKAAGGTCDFGGTATIVTRDPTE |
Full Sequence |
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Protein Sequence Length: 328 Download |
RLQSRSSNPL LNALYKLNFI RTVEPARPLL PPPAAGADAE SLAAGDTNAP FCVNPPDAPP 60 ASTMAPPFTS TPFTPSVPDQ APPLPPITPV PPSFEPSPPD SGAPGGGGQG GQGQGGGQGQ 120 GGQGGGQGQG GGQGQGGQGG GQGQEGPPAS TTPSTPPQTG PGAPFGSAPP SPIVVVPSPP 180 EFGPGGGGVP GSGGGGGGGG GPFQPPIIYP PPLAPPLPPG AGQTLWCVAK PTVPDPIIQE 240 AMDYACGSGA ECDSIQPTGA CYHPNTVLAH ASFAFNSYWQ QSKAAGGTCD FGGTATIVTR 300 DPTEHLKKAP TTHLAPMCAC HGNFAQF* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-25 | 225 | 296 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-35 | 225 | 303 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001053843.1 | 2.94273e-44 | 203 | 303 | 222 | 320 | Os04g0612100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141530.1 | 0.00000000004 | 9 | 58 | 46 | 93 | hypothetical protein LOC100273642 [Zea mays] |
RefSeq | NP_001141530.1 | 0 | 149 | 308 | 171 | 324 | hypothetical protein LOC100273642 [Zea mays] |
RefSeq | XP_002448511.1 | 0.00000001 | 12 | 78 | 52 | 113 | hypothetical protein SORBIDRAFT_06g028225 [Sorghum bicolor] |
RefSeq | XP_002448511.1 | 0 | 147 | 302 | 248 | 416 | hypothetical protein SORBIDRAFT_06g028225 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 4e-17 | 216 | 303 | 5 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 4a4z_A | 0.007 | 96 | 153 | 259 | 325 | A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR823720 | 80 | 224 | 303 | 9.99967e-42 |
DR801503 | 79 | 224 | 302 | 1.99993e-41 |
FG856541 | 79 | 225 | 303 | 2e-37 |
CO982195 | 79 | 225 | 303 | 4e-37 |
EG665507 | 79 | 225 | 303 | 2e-36 |
Sequence Alignments (This image is cropped. Click for full image.) |
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