y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00069751m |
Family | CBM43 |
Protein Properties | Length: 144 Molecular Weight: 14453.4 Isoelectric Point: 7.0035 |
Chromosome | Chromosome/Scaffold: 008687 Start: 2815 End: 4224 |
Description | plasmodesmata callose-binding protein 5 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 39 | 125 | 4.7e-32 |
WCVAKNNAEDGALQSAIDWACSADGGRADCAAIQQGGACYNPPDLQRHASYAFNDYFLRAGGGASPAACDFSGAAALTALNPSYGSC |
Full Sequence |
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Protein Sequence Length: 144 Download |
MPAPSPLRLL VLAPILLLLA PRASAAGAAV GVSGGGQLWC VAKNNAEDGA LQSAIDWACS 60 ADGGRADCAA IQQGGACYNP PDLQRHASYA FNDYFLRAGG GASPAACDFS GAAALTALNP 120 SYGSCVFPSR SVIRVYISYC GVS* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-15 | 38 | 113 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-31 | 38 | 127 | 90 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM67357.1 | 5e-33 | 1 | 129 | 46 | 168 | unknown [Arabidopsis thaliana] |
RefSeq | NP_001057795.1 | 1.99993e-41 | 33 | 131 | 35 | 133 | Os06g0537700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001132372.1 | 0 | 37 | 129 | 33 | 125 | hypothetical protein LOC100193817 [Zea mays] |
RefSeq | NP_567060.1 | 4e-33 | 1 | 129 | 5 | 127 | PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5); callose binding / polysaccharide binding [Arabidopsis thaliana] |
RefSeq | XP_002438507.1 | 0 | 24 | 129 | 17 | 122 | hypothetical protein SORBIDRAFT_10g021130 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 4e-18 | 39 | 131 | 13 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |