y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10001167 |
Family | CBM43 |
Protein Properties | Length: 123 Molecular Weight: 13626.2 Isoelectric Point: 4.1393 |
Chromosome | Chromosome/Scaffold: 560 Start: 16694 End: 17327 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 34 | 117 | 4.6e-31 |
WCIADEQTPDDELQSAITWACEKGRADCSKVQVNQPCFWPNTTIDHASYVFNNYFQQFKHTGGSCYFNGAGIVTDLDPSHGSCQ |
Full Sequence |
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Protein Sequence Length: 123 Download |
MSSFNQRLLL VFAAALLLVI SLSTQQSDGE MEQWCIADEQ TPDDELQSAI TWACEKGRAD 60 CSKVQVNQPC FWPNTTIDHA SYVFNNYFQQ FKHTGGSCYF NGAGIVTDLD PSHGSCQFEF 120 IA* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 5.0e-15 | 33 | 105 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-32 | 33 | 118 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK92842.1 | 0 | 12 | 121 | 6 | 118 | unknown [Populus trichocarpa] |
EMBL | CBI28425.1 | 0 | 26 | 121 | 21 | 116 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002307902.1 | 0 | 12 | 121 | 5 | 117 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321180.1 | 0 | 17 | 120 | 12 | 115 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522909.1 | 0 | 17 | 121 | 12 | 116 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.00000000000001 | 34 | 119 | 13 | 97 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |