y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os03g61780.1 |
Family | CBM43 |
Protein Properties | Length: 576 Molecular Weight: 58852.9 Isoelectric Point: 8.2725 |
Chromosome | Chromosome/Scaffold: 3 Start: 35025919 End: 35028759 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 377 | 458 | 2.2e-35 |
WCVAKAGLMDAALQSGLDYACGMGGADCTAIQPMGACYNPNTLQAHASYAFNSYFQRNPSPASCDFGGAGMLVNINPSSGTC |
Full Sequence |
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Protein Sequence Length: 576 Download |
MATSWSVAFT IFFSCILLLE TISSSVASLD CSYGSAQVKI LSSSVVSEQQ NVYLFLKPFQ 60 STRSCSARRL AGEFVNGVVV PNLRLNVTGV VVTANERQLG ALRCTLESVQ AELAVAGLGR 120 SVKVSPELSL PSLRAMAKCR RRGEKHWRRV MEFVRRSGSF VVVEMGAEEK ADLAVADVAA 180 AFEEGVGVAF RISGRAARSA AEMARLIGDA DKGRRWTGVL AEVASPSPRR ELAAAARTTA 240 RDVFAPVTNP TTTPATNPVT VPATNPAMNP VTPGIVTVPS TNPATGYSNN PNLPPLYPEP 300 TPVTMPDPTT TTTPTPFMNP VTAPTMPSPV TNPATTPAVT NPTTMPYPYP PQQGGVMPTT 360 PTYQPPATMP AAGGQTWCVA KAGLMDAALQ SGLDYACGMG GADCTAIQPM GACYNPNTLQ 420 AHASYAFNSY FQRNPSPASC DFGGAGMLVN INPSSGTCLF QASSAGYGAG YSPGVTGTVP 480 VGGGAGAGAG VGVGVTPMGP AVGGTGGAGV TPMGPAVGGG SGSTVLNANS PGGNSMYGSD 540 SNPTSLTGAA AAALSSGWVL CLVWIFTFAY VKEKV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 9.0e-21 | 376 | 447 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-39 | 376 | 460 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Gene Ontology | |
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GO Term | Description |
GO:0005623 | cell |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAR88597.1 | 0 | 1 | 575 | 1 | 594 | putative glucanase [Oryza sativa Japonica Group] |
GenBank | ABF99730.1 | 0 | 1 | 575 | 1 | 574 | expressed protein [Oryza sativa (japonica cultivar-group)] |
GenBank | ABF99731.1 | 0 | 1 | 575 | 1 | 575 | expressed protein [Oryza sativa (japonica cultivar-group)] |
GenBank | ACN28414.1 | 0 | 2 | 575 | 3 | 613 | unknown [Zea mays] |
RefSeq | XP_002463588.1 | 0 | 1 | 575 | 1 | 615 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5e-18 | 366 | 464 | 3 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |