y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si002288m |
Family | CBM43 |
Protein Properties | Length: 318 Molecular Weight: 32751.9 Isoelectric Point: 4.779 |
Chromosome | Chromosome/Scaffold: 5 Start: 38417632 End: 38419939 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 152 | 234 | 3.4e-34 |
WCVVKAAGSSEAALQNALDYACGIGKADCSAIQPSGSCYYPNTLQAHASYAFNSYYQRNPAPSSCDFGGTAMLVTANPSSGSC |
Full Sequence |
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Protein Sequence Length: 318 Download |
MARASMAALL FLHILLSPFA EETTAAAAGK PNIVHDDLNP VQVTNPITTV PSTNPTPTII 60 TVPSTNPTIT IPSLNPLPTP ITDNPPSTAP PVPVIYPLPT PSTTSPPTVP VTNPTVTTPS 120 TFPPSAPFTN LNPTPPPAQI ITAPAVSGQQ FWCVVKAAGS SEAALQNALD YACGIGKADC 180 SAIQPSGSCY YPNTLQAHAS YAFNSYYQRN PAPSSCDFGG TAMLVTANPS SGSCVFPSLS 240 SSTVGYNPAT TTTPLPSSSG SDSGSPVLNA SGTGFSEPSE FGPDIPGAVD TGDAWRSIKP 300 LHWLWAALVW ILHFVRT* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-22 | 152 | 223 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-39 | 152 | 236 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR36168.1 | 0 | 22 | 312 | 24 | 330 | unknown [Zea mays] |
GenBank | EAZ17118.1 | 0 | 35 | 317 | 39 | 326 | hypothetical protein OsJ_32617 [Oryza sativa Japonica Group] |
GenBank | EEC73314.1 | 0 | 35 | 317 | 38 | 325 | hypothetical protein OsI_07501 [Oryza sativa Indica Group] |
RefSeq | XP_002450265.1 | 0 | 29 | 300 | 107 | 395 | hypothetical protein SORBIDRAFT_05g002745 [Sorghum bicolor] |
RefSeq | XP_002512573.1 | 0 | 33 | 315 | 102 | 398 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-17 | 152 | 241 | 13 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |