y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra035382 |
Family | CBM43 |
Protein Properties | Length: 120 Molecular Weight: 13241 Isoelectric Point: 5.036 |
Chromosome | Chromosome/Scaffold: 000104 Start: 415291 End: 415832 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 30 | 114 | 1.1e-32 |
WCIADEQTPDDELQAALDWACSKGGADCSKMQQQNQPCFLPNTIRDHASVAFNSYYQTYKHKGGSCYFKGAAMITELDPSHGSCH |
Full Sequence |
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Protein Sequence Length: 120 Download |
MSTFLMRILL ALLVLALAIP QQSAAESEQW CIADEQTPDD ELQAALDWAC SKGGADCSKM 60 QQQNQPCFLP NTIRDHASVA FNSYYQTYKH KGGSCYFKGA AMITELDPSH GSCHYEYKP* 120 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-16 | 29 | 102 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-35 | 29 | 115 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK92842.1 | 0 | 1 | 119 | 2 | 119 | unknown [Populus trichocarpa] |
EMBL | CBI28425.1 | 0 | 17 | 119 | 16 | 117 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_198423.1 | 0 | 1 | 119 | 1 | 119 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
RefSeq | XP_002321180.1 | 0 | 1 | 119 | 1 | 117 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531703.1 | 0 | 1 | 109 | 1 | 107 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.000000000000006 | 18 | 115 | 1 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |