y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.001G216900.4 |
Family | CBM43 |
Protein Properties | Length: 470 Molecular Weight: 50778.3 Isoelectric Point: 6.1109 |
Chromosome | Chromosome/Scaffold: 01 Start: 43384407 End: 43386536 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 381 | 464 | 1.6e-33 |
WCVANGEAGKEKLQAALDFACGEGGADCHSIQPGATCYDPNTLEAHASFAFNSYYQKNGRHMGTCYFGGAAYVVTQPPKYGDCE | |||
GH17 | 25 | 344 | 0 |
IGVNYGRIANNLPSATKVVELLKSQALNRVKVYDTDPAVLHALSGSGIKVTVDLPNEQLFAAAKSTSFANSWVQRNVAAYYPHTEIEAIAVGNEVFVDPR NTTKFLVPAMKNIHQALVKSNLHSDIKISSPIALSALQNSYPSSAGSFRPELIEPVFKPMLNFLRQTGSFLMVNAYPFFAYESNTDVISLDYALFRENPG VVDAGNGLRYFSLFDAQVDAVFAAMSALKYDDIRLVVTETGWPSKGDENEIGASAENAAAYNGNLVRRILTGGGTPLRPKADLTVYLFALFNENNKVGPT SERNYGLFYPTEEKVYDIPF |
Full Sequence |
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Protein Sequence Length: 470 Download |
MVPIFASFSL LLISALFIVA DCGSIGVNYG RIANNLPSAT KVVELLKSQA LNRVKVYDTD 60 PAVLHALSGS GIKVTVDLPN EQLFAAAKST SFANSWVQRN VAAYYPHTEI EAIAVGNEVF 120 VDPRNTTKFL VPAMKNIHQA LVKSNLHSDI KISSPIALSA LQNSYPSSAG SFRPELIEPV 180 FKPMLNFLRQ TGSFLMVNAY PFFAYESNTD VISLDYALFR ENPGVVDAGN GLRYFSLFDA 240 QVDAVFAAMS ALKYDDIRLV VTETGWPSKG DENEIGASAE NAAAYNGNLV RRILTGGGTP 300 LRPKADLTVY LFALFNENNK VGPTSERNYG LFYPTEEKVY DIPFTVEGLK NYHDRRSPVA 360 GNQPVNGGKG GVSKSTTGNT WCVANGEAGK EKLQAALDFA CGEGGADCHS IQPGATCYDP 420 NTLEAHASFA FNSYYQKNGR HMGTCYFGGA AYVVTQPPKY GDCEFPTGY* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 9.0e-5 | 37 | 333 | 308 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 5.0e-25 | 380 | 452 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-40 | 380 | 465 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-109 | 25 | 344 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_178637.2 | 0 | 21 | 469 | 21 | 472 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002274828.1 | 0 | 6 | 469 | 5 | 471 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302861.1 | 0 | 1 | 469 | 1 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333242.1 | 0 | 20 | 469 | 19 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525335.1 | 0 | 20 | 458 | 19 | 458 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 25 | 344 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 25 | 344 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 25 | 344 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 25 | 345 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 25 | 345 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |