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Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00031793m |
Family | GT8 |
Protein Properties | Length: 537 Molecular Weight: 58343.9 Isoelectric Point: 7.8941 |
Chromosome | Chromosome/Scaffold: 012407 Start: 2153 End: 6217 |
Description | galacturonosyltransferase 15 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 184 | 506 | 0 |
CLTLRLAEEFAVNSAARSPVPPPEHAPRLTDASYLHVALVTDNVLAAAVAVASAARSAANPGRLVFHVVTDKKSYVPMHSWFALHPASPAAVEVKGLHQF DWRDGGVVASVMRTVEEVQRSSLDYHRSGGSSAEREHRRLQASKPSTFSLLNYLKIHLPEFFPELGRVVLLDDDVVVRKDLTGLWEQDLDGNIIGAVGAR EGGGICTDKTLGDHLNFSDPAVSGLLSSQCAWSWGVNIIDLDAWRRTNVTETYQLWLQKNRESGFRLWQMASLPPALIAFDGRVQAIEPLWHLPGLGRRV PDPEAARSSAVLHFSGPRKPWLE |
Full Sequence |
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Protein Sequence Length: 537 Download |
MRVYITAGAD DDAVMKPKAA APQPQQQQQA AARRGCRSAV VTGLLAGVLL FRAALLAVEA 60 GASLCPSATG CLDWRAGLGR WLYGGGGGGG DAMEEFMKEW RRTHRAATLL DPVVVEAAPD 120 SLDALMAEMG AALASYDGRL DMEAVAVKMM AMLLKMDRKV KSSRVRALFK RHLASLGVPK 180 SVHCLTLRLA EEFAVNSAAR SPVPPPEHAP RLTDASYLHV ALVTDNVLAA AVAVASAARS 240 AANPGRLVFH VVTDKKSYVP MHSWFALHPA SPAAVEVKGL HQFDWRDGGV VASVMRTVEE 300 VQRSSLDYHR SGGSSAEREH RRLQASKPST FSLLNYLKIH LPEFFPELGR VVLLDDDVVV 360 RKDLTGLWEQ DLDGNIIGAV GAREGGGICT DKTLGDHLNF SDPAVSGLLS SQCAWSWGVN 420 IIDLDAWRRT NVTETYQLWL QKNRESGFRL WQMASLPPAL IAFDGRVQAI EPLWHLPGLG 480 RRVPDPEAAR SSAVLHFSGP RKPWLEVAFP ELRQLWLGHL NASDSFLQGC GVLEWQ* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02742 | PLN02742 | 4.0e-67 | 106 | 530 | 430 | + Probable galacturonosyltransferase | ||
cd06429 | GT8_like_1 | 1.0e-80 | 244 | 521 | 279 | + GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. | ||
PLN02659 | PLN02659 | 7.0e-108 | 119 | 532 | 426 | + Probable galacturonosyltransferase | ||
PLN02870 | PLN02870 | 2.0e-113 | 119 | 534 | 427 | + Probable galacturonosyltransferase | ||
PLN02867 | PLN02867 | 7.0e-132 | 52 | 533 | 493 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN34134.1 | 0 | 97 | 536 | 1 | 438 | unknown [Zea mays] |
GenBank | EEC71413.1 | 0 | 30 | 534 | 15 | 518 | hypothetical protein OsI_03591 [Oryza sativa Indica Group] |
RefSeq | NP_001044121.1 | 0 | 1 | 534 | 1 | 536 | Os01g0727100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147797.1 | 0 | 1 | 536 | 1 | 532 | transferase, transferring glycosyl groups [Zea mays] |
RefSeq | XP_002456278.1 | 0 | 94 | 536 | 30 | 473 | hypothetical protein SORBIDRAFT_03g033400 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ss9_A | 0.0000002 | 332 | 504 | 80 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1ga8_A | 0.000004 | 332 | 504 | 80 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1g9r_A | 0.000004 | 332 | 504 | 80 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL897009 | 234 | 244 | 477 | 0 |
FL902042 | 217 | 244 | 460 | 0 |
CB656533 | 249 | 99 | 347 | 0 |
FL785546 | 219 | 1 | 219 | 0 |
FL785545 | 196 | 1 | 196 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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