y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra022739 |
Family | GT8 |
Protein Properties | Length: 535 Molecular Weight: 60726.3 Isoelectric Point: 9.0304 |
Chromosome | Chromosome/Scaffold: 02 Start: 7685561 End: 7687601 |
Description | galacturonosyltransferase 12 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 174 | 506 | 0 |
CLALKLANEHPINAAARLQLPEAELVPTLVENNYFHFVLASDNVLAASVVAKSLVQNSLRPHKIVLHIITDRKTYFPMQAWFSLHPLSPAVIEVKALHHF DWLSKGKVPVLEAMEKDQRVRSQFRGGSSVIVANNNENPVVVAAKLQALSPKYNSMMNHIRIHLPELFPSLNKVVFLDDDVVIQTDLSPLWDIDMDGKVN GAVETCRGEDKFVMSKKFKSYLNFSNPIIATNFDPEECAWAYGMNVFDLAAWRKTNITSTYYHWLDENLKSDLSLWQLGTLPPGLIAFHGHVQTIDPFWH MLGLGYQEITSFSDAESAAVVHFNGRAKPWLDI |
Full Sequence |
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Protein Sequence Length: 535 Download |
MQLHISPSLR QVTVVKGKGL REFIKVKVGS RRFSYQMMFY SLLFFTFLLR LVFVLSTVDT 60 IDGASPCSSL ACLGKRLKPK LLGRRVETGN VPEAMYQVLE QPLSEEELKG RSDIPQTLED 120 FMSEVKRSKS DAREFAQKLK EMVTLMEQRT RTAKIQEYLY RHVASSSIPK QLHCLALKLA 180 NEHPINAAAR LQLPEAELVP TLVENNYFHF VLASDNVLAA SVVAKSLVQN SLRPHKIVLH 240 IITDRKTYFP MQAWFSLHPL SPAVIEVKAL HHFDWLSKGK VPVLEAMEKD QRVRSQFRGG 300 SSVIVANNNE NPVVVAAKLQ ALSPKYNSMM NHIRIHLPEL FPSLNKVVFL DDDVVIQTDL 360 SPLWDIDMDG KVNGAVETCR GEDKFVMSKK FKSYLNFSNP IIATNFDPEE CAWAYGMNVF 420 DLAAWRKTNI TSTYYHWLDE NLKSDLSLWQ LGTLPPGLIA FHGHVQTIDP FWHMLGLGYQ 480 EITSFSDAES AAVVHFNGRA KPWLDIAFPH LRPLWAKYLD SSDRFIKSCH IRAA* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02523 | PLN02523 | 4.0e-119 | 87 | 529 | 447 | + galacturonosyltransferase | ||
PLN02742 | PLN02742 | 1.0e-122 | 138 | 532 | 395 | + Probable galacturonosyltransferase | ||
PLN02867 | PLN02867 | 5.0e-152 | 1 | 531 | 538 | + Probable galacturonosyltransferase | ||
PLN02659 | PLN02659 | 0 | 1 | 534 | 534 | + Probable galacturonosyltransferase | ||
PLN02870 | PLN02870 | 0 | 1 | 531 | 531 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABP65660.1 | 0 | 1 | 534 | 1 | 533 | secondary wall-associated glycosyltransferase family 8D [Populus tremula x Populus alba] |
EMBL | CBI20502.1 | 0 | 1 | 534 | 1 | 533 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_200280.1 | 0 | 1 | 534 | 1 | 535 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002282637.1 | 0 | 1 | 534 | 1 | 534 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319802.1 | 0 | 1 | 534 | 1 | 533 | glycosyltransferase, CAZy family GT8 [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ss9_A | 0.00003 | 322 | 503 | 74 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1ga8_A | 0.00007 | 322 | 503 | 74 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1g9r_A | 0.00007 | 322 | 503 | 74 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |