y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00030037m |
Family | GT8 |
Protein Properties | Length: 478 Molecular Weight: 54713.4 Isoelectric Point: 7.9474 |
Chromosome | Chromosome/Scaffold: 006294 Start: 45 End: 5153 |
Description | galacturonosyltransferase 13 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 116 | 446 | 0 |
CLSLRLTDEYSSNALARKQLPPPELVPRLSDNSYYHFVLASDNILAASVVVRSTVRSSLKPERIVFHVITDKKTYPAMHSWFALNSLYPAIVEVKGVHQF DWLTKENGPVLEAIETQRTVRDRYHGNHLAKTSASDSPRVFAAKLQAGSPTYTSVLNHIRIYLPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLAGKVNG AVETCRGGDSWVMSKRFRNYFNFSHPLIANNFDPSECAWAYGMNIFDLNVWRKTTIKDKYHHWVKENLKSNFTLWRLGTLPPGLIAFKGHVHPIDPSWHL LGLGYQEKTDISSVEQAAVIHYNGQSKPWLE |
Full Sequence |
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Protein Sequence Length: 478 Download |
MTLEGFNKCS SLDCLGRRLG PRLLGRGNDG SMRLVRDLYS ILDEINAEEA PVDLKVPESF 60 DEFIWDMKNN DYDLRSFAFK LKATMESMDK ELRSSRLSEQ LNKHYAAIAI PKGLYCLSLR 120 LTDEYSSNAL ARKQLPPPEL VPRLSDNSYY HFVLASDNIL AASVVVRSTV RSSLKPERIV 180 FHVITDKKTY PAMHSWFALN SLYPAIVEVK GVHQFDWLTK ENGPVLEAIE TQRTVRDRYH 240 GNHLAKTSAS DSPRVFAAKL QAGSPTYTSV LNHIRIYLPE LFPSLNKVVF LDDDVVVQHD 300 LSPLWDIDLA GKVNGAVETC RGGDSWVMSK RFRNYFNFSH PLIANNFDPS ECAWAYGMNI 360 FDLNVWRKTT IKDKYHHWVK ENLKSNFTLW RLGTLPPGLI AFKGHVHPID PSWHLLGLGY 420 QEKTDISSVE QAAVIHYNGQ SKPWLEIGFK HLQQFWTRHV NYSNEFIRNC HIMEPQL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02829 | PLN02829 | 4.0e-129 | 68 | 472 | 405 | + Probable galacturonosyltransferase | ||
PLN02742 | PLN02742 | 3.0e-130 | 72 | 472 | 405 | + Probable galacturonosyltransferase | ||
PLN02867 | PLN02867 | 2.0e-172 | 1 | 473 | 479 | + Probable galacturonosyltransferase | ||
PLN02870 | PLN02870 | 0 | 1 | 475 | 476 | + Probable galacturonosyltransferase | ||
PLN02659 | PLN02659 | 0 | 2 | 472 | 473 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY83641.1 | 0 | 32 | 477 | 1 | 446 | hypothetical protein OsI_38869 [Oryza sativa Indica Group] |
RefSeq | NP_001067123.1 | 0 | 5 | 477 | 82 | 554 | Os12g0578500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001145771.1 | 0 | 5 | 477 | 63 | 535 | hypothetical protein LOC100279278 [Zea mays] |
RefSeq | XP_002324094.1 | 0 | 5 | 474 | 57 | 526 | glycosyltransferase [Populus trichocarpa] |
RefSeq | XP_002443426.1 | 0 | 5 | 477 | 63 | 535 | hypothetical protein SORBIDRAFT_08g019260 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ga8_A | 0.000009 | 262 | 444 | 70 | 252 | A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta Subunit (tm0716) From Thermotoga Maritima At 2.30 A Resolution |
PDB | 1g9r_A | 0.000009 | 262 | 444 | 70 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1ss9_A | 0.00001 | 262 | 444 | 70 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO875752 | 295 | 184 | 478 | 0 |
GO798097 | 302 | 156 | 457 | 0 |
GT051833 | 299 | 100 | 398 | 0 |
GT051833 | 48 | 386 | 433 | 0.0000001 |
GO798097 | 20 | 459 | 478 | 0.021 |
Sequence Alignments (This image is cropped. Click for full image.) |
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