y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00030036m |
Family | GT8 |
Protein Properties | Length: 536 Molecular Weight: 61332.4 Isoelectric Point: 8.8455 |
Chromosome | Chromosome/Scaffold: 006294 Start: 2 End: 5153 |
Description | galacturonosyltransferase 13 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 174 | 504 | 0 |
CLSLRLTDEYSSNALARKQLPPPELVPRLSDNSYYHFVLASDNILAASVVVRSTVRSSLKPERIVFHVITDKKTYPAMHSWFALNSLYPAIVEVKGVHQF DWLTKENGPVLEAIETQRTVRDRYHGNHLAKTSASDSPRVFAAKLQAGSPTYTSVLNHIRIYLPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLAGKVNG AVETCRGGDSWVMSKRFRNYFNFSHPLIANNFDPSECAWAYGMNIFDLNVWRKTTIKDKYHHWVKENLKSNFTLWRLGTLPPGLIAFKGHVHPIDPSWHL LGLGYQEKTDISSVEQAAVIHYNGQSKPWLE |
Full Sequence |
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Protein Sequence Length: 536 Download |
MQIRLSPSMR SITISTSHGL LDFMRLKAAA RHFSYRTVFH TVLILAFLLP FVFILTAVMT 60 LEGFNKCSSL DCLGRRLGPR LLGRGNDGSM RLVRDLYSIL DEINAEEAPV DLKVPESFDE 120 FIWDMKNNDY DLRSFAFKLK ATMESMDKEL RSSRLSEQLN KHYAAIAIPK GLYCLSLRLT 180 DEYSSNALAR KQLPPPELVP RLSDNSYYHF VLASDNILAA SVVVRSTVRS SLKPERIVFH 240 VITDKKTYPA MHSWFALNSL YPAIVEVKGV HQFDWLTKEN GPVLEAIETQ RTVRDRYHGN 300 HLAKTSASDS PRVFAAKLQA GSPTYTSVLN HIRIYLPELF PSLNKVVFLD DDVVVQHDLS 360 PLWDIDLAGK VNGAVETCRG GDSWVMSKRF RNYFNFSHPL IANNFDPSEC AWAYGMNIFD 420 LNVWRKTTIK DKYHHWVKEN LKSNFTLWRL GTLPPGLIAF KGHVHPIDPS WHLLGLGYQE 480 KTDISSVEQA AVIHYNGQSK PWLEIGFKHL QQFWTRHVNY SNEFIRNCHI MEPQL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02829 | PLN02829 | 9.0e-129 | 126 | 530 | 405 | + Probable galacturonosyltransferase | ||
PLN02742 | PLN02742 | 2.0e-129 | 130 | 530 | 405 | + Probable galacturonosyltransferase | ||
PLN02870 | PLN02870 | 0 | 1 | 533 | 534 | + Probable galacturonosyltransferase | ||
PLN02659 | PLN02659 | 0 | 1 | 530 | 532 | + Probable galacturonosyltransferase | ||
PLN02867 | PLN02867 | 0 | 6 | 531 | 537 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY83641.1 | 0 | 90 | 535 | 1 | 446 | hypothetical protein OsI_38869 [Oryza sativa Indica Group] |
RefSeq | NP_001067123.1 | 0 | 1 | 535 | 1 | 554 | Os12g0578500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001145771.1 | 0 | 1 | 535 | 1 | 535 | hypothetical protein LOC100279278 [Zea mays] |
RefSeq | XP_002284273.1 | 0 | 1 | 532 | 1 | 533 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002443426.1 | 0 | 1 | 535 | 1 | 535 | hypothetical protein SORBIDRAFT_08g019260 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ga8_A | 0.00001 | 320 | 502 | 70 | 252 | A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From Nicotiana Tobaccum In Complex With Nag4 |
PDB | 1g9r_A | 0.00001 | 320 | 502 | 70 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1ss9_A | 0.00001 | 320 | 502 | 70 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |