y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013832 |
Family | GT8 |
Protein Properties | Length: 1945 Molecular Weight: 218363 Isoelectric Point: 8.6896 |
Chromosome | Chromosome/Scaffold: 618 Start: 189306 End: 199350 |
Description | Pentatricopeptide repeat (PPR) superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 711 | 1026 | 0 |
CLPLQLAADYFLQGHQNKQYFNSGKLENPKLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHVVTDKLNFAAMKMWFIVNPPARATIEVMNIDDFKWL NSSYCSVLRQLESSRVKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDLAPLWSVDLRGMVNGAVETCKESF HRFDKYLNFSNPKINENFHPNACGWAFGMNMFDLKEWKKQNITGIYHYWQDQNEDRTLWKLGTLPPGLITFYNLTYPLDRGWHVLGLGYDPALNQTEIEN GAVVHYNGNYKPWLDL |
Full Sequence |
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Protein Sequence Length: 1945 Download |
MRFCCWSSSP TSPTPTSTGR LSSGGVSHTP SSSNATSSGS GNTNSSKGSN VSGNSQFSAS 60 SGDDAFPNGQ LLPTPHLRIF SFTELKLATK NFRADTVLGE GGFGKVYKGW LDERKPGKSG 120 SGTVVAVKKL NSESLQGLEE WQSEINFLGR LSHPNLVRLL GYCLEEDELL LVYEFMQKGS 180 LENHLFGRGA AVQPLPWDTR LSIAIGAARG LAFLHTPDKK IIYRDFKASN ILLDGSYTSK 240 ISDFGLAKFG PSASQSHVTT RVMGTYGYAA PEYVSTGHLY VKSDVYGFGV VLVEILTGLR 300 ALDTSRPSGR HSIAEWIKPY LNDKRKLKSM MDTNLEGKYP SKAAFRIAQL ALVCLESEPK 360 NRPHMREVVE TLERIASNNE RTLEPRSHRS SNNRPVAHRN GQRPLQLRSP LHQQQDAGQD 420 LLPLFFLDRE LKSLRSFSDC QACDDTKDID IIATYSDPSG NVRVSRVKMK NLSASWVLEN 480 PDDEHDRRNS SSKTLEHGNF PKDKPRKQVI RQRFEGGKTQ FPLKSVMSPV KLKRRIARQK 540 RKDLRIAELI QHDNEADNQA RSAAIERSKA LDTTIRGKYS IWRRDFENPN SDAMLKLMRD 600 QMIMAKAYSN IAKSNNETGL YISLMKNSKD SQLAIGEATS DAELHPSALD RAKAMGRVLS 660 MAKDQLYDCP TMSRKLRAML QSSEEHLNAV RKKSAFLIQL AAKTVPKPLH CLPLQLAADY 720 FLQGHQNKQY FNSGKLENPK LYHYAIFSDN VLATSVVVNS TVLHAKEPQK HVFHVVTDKL 780 NFAAMKMWFI VNPPARATIE VMNIDDFKWL NSSYCSVLRQ LESSRVKEYY FKANHPSSLS 840 AGSDNLKYRN PKYLSMLNHL RFYLPEVYPK LDKILFLDDD IVVQKDLAPL WSVDLRGMVN 900 GAVETCKESF HRFDKYLNFS NPKINENFHP NACGWAFGMN MFDLKEWKKQ NITGIYHYWQ 960 DQNEDRTLWK LGTLPPGLIT FYNLTYPLDR GWHVLGLGYD PALNQTEIEN GAVVHYNGNY 1020 KPWLDLAIAN ATSVNKKPAA GRPTTLLPLL LAGKLIFFDQ LKKISGLPEE RAGGETPKFQ 1080 HRESMEPTAK LTRALLVNTS NPKLAWHLFK RILTLPSLDH FPHSVETITR ILVRAKLLNE 1140 LDDLHVRLHS NLPAHILHPC LTSSITVSAQ SGQFGKALSH FKAMRFRFPD EPPSVRLYNC 1200 LIRSCIKDGS VEHVGWLYKD MIVAGVSPET FTFNILIGFL CNGGRLEEAQ ELFDKMSEKG 1260 CEPNEFTYGI LVRGYCRAGD STRGLELMSE MTSRGLLPNN VVYNTLISTF CKQGKNDDAE 1320 KLVERMKEEG LHPDVVTFNS RISALCDAGK TLDACRIFRD MQNDLHLGLP RPNIVTYNLM 1380 LKGFFKEGQV EDAKSLFEIM KNNRVLVNIE SYNIWLAGMF RNRKNFEAHL VFKEMIDMGI 1440 KPNICSCNIM IDGLCKNGMF SDARTLMKEM IVNQIFPDAV TYSTLLHGYC SRGMVLQANS 1500 VLHEMMQNGC NPTTYTCNIL LHSLWKEDKI PEAEKLLQKM HERGYGVDTV TCNIILEGLC 1560 NHGQLDKAID VVNGMWAHGS AALGNLGNSF IGLIDGENNA RKCVPDLISY SIVISGLCKA 1620 GRVDEAKKKF LEMMGKHLQP DSAIYDTFIR SFCKEGKLSA AFRVLKDMEK RGCNKTIHTF 1680 NSLILGLGRK NQLFEIHGLM DEMKERGISP DVYTYNNLLS CLCEGGRTKD APSVLEEMLQ 1740 KGISPNVSSF RTLLAAFCKG SDFNAAHEVF EIALDVCGHK EALYSLMFNE LVSGGLVAEA 1800 RQLFETVLDR SFDMANFLYK DLIDRLCKND KLEDASCILH KLMDKGYKFD PAAFMPVIEG 1860 LGRVGNKGEA EELSERMMEM VSEDNVKNRA GASGTRNKDE GTDWKTIIQR DDGSGVALKA 1920 LKQVQKGWGR GCLLGKRPQE DDST* 1980 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02718 | PLN02718 | 8.0e-151 | 591 | 1030 | 443 | + Probable galacturonosyltransferase | ||
PLN02523 | PLN02523 | 1.0e-157 | 583 | 1028 | 475 | + galacturonosyltransferase | ||
PLN02742 | PLN02742 | 5.0e-179 | 600 | 1028 | 437 | + Probable galacturonosyltransferase | ||
PLN02910 | PLN02910 | 0 | 445 | 1029 | 591 | + polygalacturonate 4-alpha-galacturonosyltransferase | ||
PLN02829 | PLN02829 | 0 | 539 | 1028 | 508 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0004672 | protein kinase activity |
GO:0005524 | ATP binding |
GO:0006468 | protein phosphorylation |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179305.2 | 0 | 1091 | 1942 | 5 | 865 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002279589.1 | 0 | 1085 | 1942 | 1 | 869 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002328265.1 | 0 | 1175 | 1910 | 1 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527150.1 | 0 | 1085 | 1940 | 1 | 863 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
RefSeq | XP_002533896.1 | 0 | 447 | 1028 | 39 | 617 | Glycosyltransferase QUASIMODO1, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ulz_A | 0 | 76 | 373 | 16 | 307 | A Chain A, Crystal Structure Of Membrane-Bound Lytic Murein Transglycosylase From Agrobacterium Tumefaciens |
PDB | 3uim_A | 0 | 76 | 373 | 16 | 307 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
PDB | 3tl8_H | 0 | 76 | 373 | 24 | 315 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_G | 0 | 76 | 373 | 24 | 315 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_D | 0 | 76 | 373 | 24 | 315 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO782208 | 303 | 735 | 1037 | 0 |
HO795725 | 431 | 598 | 1028 | 0 |
FG612224 | 287 | 751 | 1037 | 0 |
DC885098 | 311 | 106 | 416 | 0 |
AM728565 | 288 | 692 | 979 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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