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Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00014771m |
Family | GT8 |
Protein Properties | Length: 508 Molecular Weight: 58435.9 Isoelectric Point: 9.0313 |
Chromosome | Chromosome/Scaffold: 040326 Start: 2177 End: 5105 |
Description | galacturonosyltransferase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 165 | 480 | 0 |
CLSMRLTIDYYLLPLEKRKFPRSENLENPSLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWL NSSYCPVLRQLESAAMKEYYFKADRPTTLSAGSSNLKYRNPKYLSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDLTGLWDVDLNGNVNGAVETCGESF HRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLKEWKKKDITGIYHKWQNKNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDG AAVVHYNGNMKPWLEL |
Full Sequence |
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Protein Sequence Length: 508 Download |
MDLLSKDDEA RVKLENAAIE RSKAVDSAVL GKYSIWRKEN ENENSDTTVR LIRDQIIMAR 60 VYSALAKSKN KSGLFQELQT RIKESQRAVG EAAADADLHH SAPEKIRAMG QVLSKAREEV 120 YDCRAITQRL RAMLQSADEQ VRSLKKQSTF LSQLAAKTIP NSIHCLSMRL TIDYYLLPLE 180 KRKFPRSENL ENPSLYHYAL FSDNVLAASV VVNSTIMNAK EPEKHVFHLV TDKLNFGAMN 240 MWFLLNPPGK ATIHVENVDE FKWLNSSYCP VLRQLESAAM KEYYFKADRP TTLSAGSSNL 300 KYRNPKYLSM LNHLRFYLPE VYPKLDKILF LDDDIVVQKD LTGLWDVDLN GNVNGAVETC 360 GESFHRFDKY LNFSNPHIAR NFDPNACGWA YGMNIFDLKE WKKKDITGIY HKWQNKNEDR 420 VLWKLGTLPP GLLTFYKLTH PLDKSWHVLG LGYNPSIDRS EIDGAAVVHY NGNMKPWLEL 480 AMTKYRPYWT KYIKYDHPYI RGCNLSE* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02910 | PLN02910 | 0 | 3 | 507 | 505 | + polygalacturonate 4-alpha-galacturonosyltransferase | ||
PLN02829 | PLN02829 | 0 | 5 | 505 | 505 | + Probable galacturonosyltransferase | ||
PLN02742 | PLN02742 | 0 | 44 | 506 | 468 | + Probable galacturonosyltransferase | ||
PLN02523 | PLN02523 | 0 | 50 | 504 | 460 | + galacturonosyltransferase | ||
PLN02718 | PLN02718 | 0 | 45 | 507 | 466 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC81302.1 | 0 | 4 | 507 | 85 | 588 | hypothetical protein OsI_24438 [Oryza sativa Indica Group] |
GenBank | EEC84934.1 | 0 | 1 | 507 | 189 | 695 | hypothetical protein OsI_32147 [Oryza sativa Indica Group] |
RefSeq | NP_001063757.1 | 0 | 1 | 507 | 189 | 695 | Os09g0531900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002302550.1 | 0 | 1 | 507 | 138 | 644 | glycosyltransferase [Populus trichocarpa] |
RefSeq | XP_002462717.1 | 0 | 1 | 507 | 177 | 683 | hypothetical protein SORBIDRAFT_02g030820 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ga8_A | 0.0000004 | 286 | 477 | 45 | 252 | A Chain A, Structure Of A Cytoplasmic Domain Of Salmonella Inva |
PDB | 1g9r_A | 0.0000004 | 286 | 477 | 45 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1ss9_A | 0.000003 | 286 | 477 | 45 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO842648 | 328 | 181 | 508 | 0 |
GT042159 | 323 | 184 | 506 | 0 |
HO795725 | 457 | 50 | 506 | 0 |
GO873566 | 314 | 130 | 443 | 0 |
GO873566 | 31 | 435 | 465 | 0.038 |
Sequence Alignments (This image is cropped. Click for full image.) |
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