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Genome Details

Selected Rep_genome_ID: ShaoY_2019_ERR3405992_bin.8
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Mediterraneibacter
→
Species
Mediterraneibacter excrementigallinarum
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
ShaoY_2019_ERR3405992_bin.8 3,239,083 93.98% 2.661% UK Europe ELGG
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
ShaoY_2019_ERR3405992_bin.8_CGC1 CGCFAM_00007 Yes 11 4
ShaoY_2019_ERR3405992_bin.8_CGC21 CGCFAM_00007 Yes 9 4
ShaoY_2019_ERR3405992_bin.8_CGC34 CGCFAM_00049 Yes 11 6
ShaoY_2019_ERR3405992_bin.8_CGC4 CGCFAM_00090 Yes 4 2
ShaoY_2019_ERR3405992_bin.8_CGC26 CGCFAM_00093 Yes 6 2
ShaoY_2019_ERR3405992_bin.8_CGC5 CGCFAM_00097 Yes 5 2
ShaoY_2019_ERR3405992_bin.8_CGC52 CGCFAM_00130 Yes 5 1
ShaoY_2019_ERR3405992_bin.8_CGC45 CGCFAM_00206 Yes 4 3
ShaoY_2019_ERR3405992_bin.8_CGC23 CGCFAM_00211 Yes 4 2
ShaoY_2019_ERR3405992_bin.8_CGC29 CGCFAM_00323 Yes 7 1
ShaoY_2019_ERR3405992_bin.8_CGC13 CGCFAM_00391 Yes 4 2
ShaoY_2019_ERR3405992_bin.8_CGC50 CGCFAM_00393 Yes 4 1
ShaoY_2019_ERR3405992_bin.8_CGC6 CGCFAM_00419 Yes 8 3
ShaoY_2019_ERR3405992_bin.8_CGC8 CGCFAM_00663 Yes 10 2
ShaoY_2019_ERR3405992_bin.8_CGC9 CGCFAM_00663 Yes 3 2
ShaoY_2019_ERR3405992_bin.8_CGC42 CGCFAM_00814 Yes 16 7
ShaoY_2019_ERR3405992_bin.8_CGC38 CGCFAM_00866 Yes 5 1
ShaoY_2019_ERR3405992_bin.8_CGC44 CGCFAM_01039 Yes 8 2
ShaoY_2019_ERR3405992_bin.8_CGC15 CGCFAM_01280 Yes 9 2
ShaoY_2019_ERR3405992_bin.8_CGC48 CGCFAM_02079 Yes 5 1
ShaoY_2019_ERR3405992_bin.8_CGC51 CGCFAM_02103 Yes 5 1
ShaoY_2019_ERR3405992_bin.8_CGC28 CGCFAM_02978 Yes 5 1
ShaoY_2019_ERR3405992_bin.8_CGC20 CGCFAM_03051 Yes 10 3
ShaoY_2019_ERR3405992_bin.8_CGC10 CGCFAM_03123 Yes 4 2
ShaoY_2019_ERR3405992_bin.8_CGC17 CGCFAM_04926 Yes 6 2
Top CAZyme Families