Cluster: ShaoY_2019_ERR3405992_bin.8_CGC44
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_01039
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_23978 | ShaoY_2019_ERR3405992_bin.8_k141_23978_3 | 3377 | 3979 | + | 2.A.124.1.3 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_23978 | ShaoY_2019_ERR3405992_bin.8_k141_23978_4 | 4122 | 5465 | - | GH30_1 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_23978 | ShaoY_2019_ERR3405992_bin.8_k141_23978_5 | 5505 | 6386 | - | 3.A.1.1.18 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_23978 | ShaoY_2019_ERR3405992_bin.8_k141_23978_6 | 6405 | 7310 | - | 3.A.1.1.35 |
| STP | ShaoY_2019_ERR3405992_bin.8_k141_23978 | ShaoY_2019_ERR3405992_bin.8_k141_23978_7 | 7408 | 8661 | - | SBP_bac_1 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_23978 | ShaoY_2019_ERR3405992_bin.8_k141_23978_8 | 8808 | 10340 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_23978 | ShaoY_2019_ERR3405992_bin.8_k141_23978_9 | 10345 | 12054 | - | 9.B.33.1.1 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_23978 | ShaoY_2019_ERR3405992_bin.8_k141_23978_10 | 12069 | 14375 | - | CBM67 | GH78 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23978_3
Type: TC
Location: 3377 - 3979 (+)
Type: TC
Location: 3377 - 3979 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23978_4
Type: CAZyme
Location: 4122 - 5465 (-)
Type: CAZyme
Location: 4122 - 5465 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23978_5
Type: TC
Location: 5505 - 6386 (-)
Type: TC
Location: 5505 - 6386 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23978_6
Type: TC
Location: 6405 - 7310 (-)
Type: TC
Location: 6405 - 7310 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23978_7
Type: STP
Location: 7408 - 8661 (-)
Type: STP
Location: 7408 - 8661 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23978_8
Type: TF
Location: 8808 - 10340 (-)
Type: TF
Location: 8808 - 10340 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23978_9
Type: TC
Location: 10345 - 12054 (-)
Type: TC
Location: 10345 - 12054 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23978_10
Type: CAZyme
Location: 12069 - 14375 (-)
Type: CAZyme
Location: 12069 - 14375 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.