🧬 Database Statistics Dashboard
📊 Overview Summary
6,031
Species Representative Genomes
13,886
Total Genomes
414,379
CAZymes
121,883
CAZyme Gene Clusters (CGCs)
🌍 Genomes Distribution by Continent
Geographic Distribution Analysis: This distribution shows the global representation of genomes in our database, with Asia and Africa having the highest representation.
| Asia | Africa | Europe | North America | Oceania | South America | NA | Total | |
|---|---|---|---|---|---|---|---|---|
| Representative Genomes | 2,105 34.9% | 1,706 28.3% | 1,095 18.2% | 371 6.2% | 105 1.7% | 16 0.3% | 633 10.5% | 6,031 |
| Total Genomes | 5,829 42.0% | 4,055 29.2% | 1,650 11.9% | 554 4.0% | 184 1.3% | 36 0.3% | 1,578 11.4% | 13,886 |
🧬 CAZymes & CGCs Analysis
414,379
Total CAZymes
121,883
CGCs
210,038
CAZymes in CGCs
50.7%
CAZymes in Clusters
68.7
Avg CAZymes/Genome
20.2
Avg CGCs/Genome
🔬 Gene Clusters & CGC Families
| Gene Clusters | Count |
|---|---|
| PULs | 602 |
| iPULs | 756 |
| CGCs | 121,883 |
| Total | 123,241 |
| CGC Families | Count |
|---|---|
| Single-substrate | 238 |
| Multi-substrate | 21 |
| Families without Substrate | 11,055 |
| Total | 11,314 |
58,579
CGCs clustered into families
4,640
CGCs assigned to Substrate
7.9%
Assignment Rate
🥗 Gut Metagenome Samples
Diet(De Filippis et al., 2019)
| Diet Type | # of Samples |
|---|---|
| Vegan | 10 |
| Omnivore | 10 |
| Vegetarian | 10 |
Diet(Huang et al., 2024)
| Diet Type | # of Samples |
|---|---|
| Vegan | 10 |
| Omnivore | 10 |
| Flexitarian | 10 |
IBD(Lloyd-Price et al., 2019)
| Conditions | # of Samples |
|---|---|
| CD | 10 |
| UC | 10 |
| non-IBD | 10 |
🧪 Structure Similarity (Foldseek alignment TM-score) of UnKnown Proteins (total 42,002)
| Database | with best hit (alntmscore) | ||||
|---|---|---|---|---|---|
| ≥0.5 | ≥0.6 | ≥0.7 | ≥0.8 | ≥0.9 | |
| AFDB | 9868 (23.5%) | 9752 (23.2%) | 9009 (21.4%) | 6075 (14.5%) | 1937 (4.6%) |
| CAZyme3D-Whole | 8825 (21.0%) | 8590 (20.5%) | 7805 (18.6%) | 5324 (12.7%) | 1805 (4.3%) |
| CAZyme-ID50 | 9074 (21.6%) | 8825 (21.0%) | 8013 (19.1%) | 5417 (12.9%) | 1546 (3.7%) |
| SwissProt | 9289 (22.1%) | 9173 (21.8%) | 8488 (20.2%) | 5692 (13.6%) | 1738 (4.1%) |
| PDB | 8272 (19.7%) | 8177 (19.5%) | 7461 (17.8%) | 5226 (12.4%) | 943 (2.2%) |