Cluster: ShaoY_2019_ERR3405992_bin.8_CGC51
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_02103
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_30647 | ShaoY_2019_ERR3405992_bin.8_k141_30647_1 | 3 | 854 | + | 3.A.3.5.15 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_30647 | ShaoY_2019_ERR3405992_bin.8_k141_30647_2 | 969 | 2954 | - | GH120 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_30647 | ShaoY_2019_ERR3405992_bin.8_k141_30647_3 | 3082 | 4248 | - | HTH_AraC | HTH_AraC |
| STP | ShaoY_2019_ERR3405992_bin.8_k141_30647 | ShaoY_2019_ERR3405992_bin.8_k141_30647_4 | 4429 | 5520 | + | Aminotran_1_2 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_30647 | ShaoY_2019_ERR3405992_bin.8_k141_30647_5 | 5551 | 6900 | - | 2.A.66.1.32 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_30647_1
Type: TC
Location: 3 - 854 (+)
Type: TC
Location: 3 - 854 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_30647_2
Type: CAZyme
Location: 969 - 2954 (-)
Type: CAZyme
Location: 969 - 2954 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_30647_3
Type: TF
Location: 3082 - 4248 (-)
Type: TF
Location: 3082 - 4248 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_30647_4
Type: STP
Location: 4429 - 5520 (+)
Type: STP
Location: 4429 - 5520 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_30647_5
Type: TC
Location: 5551 - 6900 (-)
Type: TC
Location: 5551 - 6900 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.