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Cluster: ShaoY_2019_ERR3405992_bin.8_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_19 17429 18610 - GT4
TC ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_20 18607 19644 - 9.B.97.1.3
pfam ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_21 19715 20716 - Stealth_CR2 | Stealth_CR1 | Stealth_CR3
pfam ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_22 20730 21644 - GINT1_N
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_23 21641 22684 - GT2
pfam ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_24 23328 24233 + Transposase_20
pfam ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_25 24378 25499 - EpsG
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_26 25499 26641 - GT4
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_27 26677 27786 - GT4
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_28 27862 28974 - GT4
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_29 28978 29874 - GT2
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_30 29893 31014 - GT4
pfam ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_31 31040 32002 - Transket_pyr | Transketolase_C
pfam ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_32 32020 33045 - Transketolase_N | E1_dh | DXP_synthase_N
TC ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_33 33063 33998 - 8.A.5.1.4
TC ShaoY_2019_ERR3405992_bin.8_k141_23599 ShaoY_2019_ERR3405992_bin.8_k141_23599_34 34011 34769 - 9.B.18.1.3
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_19
Type: CAZyme
Location: 17429 - 18610 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_20
Type: TC
Location: 18607 - 19644 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_21
Type: pfam
Location: 19715 - 20716 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_22
Type: pfam
Location: 20730 - 21644 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_23
Type: CAZyme
Location: 21641 - 22684 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_24
Type: pfam
Location: 23328 - 24233 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_25
Type: pfam
Location: 24378 - 25499 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_26
Type: CAZyme
Location: 25499 - 26641 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_27
Type: CAZyme
Location: 26677 - 27786 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_28
Type: CAZyme
Location: 27862 - 28974 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_29
Type: CAZyme
Location: 28978 - 29874 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_30
Type: CAZyme
Location: 29893 - 31014 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_31
Type: pfam
Location: 31040 - 32002 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_32
Type: pfam
Location: 32020 - 33045 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_33
Type: TC
Location: 33063 - 33998 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_23599_34
Type: TC
Location: 34011 - 34769 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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