Cluster: ShaoY_2019_ERR3405992_bin.8_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_00419
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_21 | 23043 | 25496 | - | GH3 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_22 | 25618 | 26463 | - | 3.A.1.1.13 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_23 | 26467 | 27429 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_24 | 27500 | 28888 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_25 | 29142 | 31841 | + | GH94 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_26 | 31870 | 34281 | + | GH94 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_27 | 34338 | 35135 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_28 | 35322 | 36056 | - | 2.A.115.2.9 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_21
Type: CAZyme
Location: 23043 - 25496 (-)
Type: CAZyme
Location: 23043 - 25496 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_22
Type: TC
Location: 25618 - 26463 (-)
Type: TC
Location: 25618 - 26463 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_23
Type: TC
Location: 26467 - 27429 (-)
Type: TC
Location: 26467 - 27429 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_24
Type:
Location: 27500 - 28888 (-)
Type:
Location: 27500 - 28888 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_25
Type: CAZyme
Location: 29142 - 31841 (+)
Type: CAZyme
Location: 29142 - 31841 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_26
Type: CAZyme
Location: 31870 - 34281 (+)
Type: CAZyme
Location: 31870 - 34281 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_27
Type: TF
Location: 34338 - 35135 (-)
Type: TF
Location: 34338 - 35135 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_28
Type: TC
Location: 35322 - 36056 (-)
Type: TC
Location: 35322 - 36056 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3405992_bin.8_k141_2466_24 | vegan > omnivore | 1.46164 | 0.04977 |