Cluster: ShaoY_2019_ERR3405992_bin.8_CGC1
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_00007
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_4 | 2065 | 2739 | + | 8.A.3.2.3 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_5 | 2806 | 4290 | + | LytR_cpsA_psr |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_6 | 4348 | 5793 | + | 9.B.18.1.2 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_7 | 5960 | 7210 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_8 | 7258 | 8028 | + | GT26 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_9 | 8526 | 9638 | + | GT4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_10 | 9928 | 11013 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_11 | 11145 | 12053 | + | GT11 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_12 | 12487 | 13653 | + | GT4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_13 | 13665 | 14867 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_673 | ShaoY_2019_ERR3405992_bin.8_k141_673_14 | 14827 | 16257 | + | 2.A.66.2.23 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_4
Type: TC
Location: 2065 - 2739 (+)
Type: TC
Location: 2065 - 2739 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_5
Type: pfam
Location: 2806 - 4290 (+)
Type: pfam
Location: 2806 - 4290 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_6
Type: TC
Location: 4348 - 5793 (+)
Type: TC
Location: 4348 - 5793 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_7
Type: pfam
Location: 5960 - 7210 (+)
Type: pfam
Location: 5960 - 7210 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_8
Type: CAZyme
Location: 7258 - 8028 (+)
Type: CAZyme
Location: 7258 - 8028 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_9
Type: CAZyme
Location: 8526 - 9638 (+)
Type: CAZyme
Location: 8526 - 9638 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_10
Type:
Location: 9928 - 11013 (+)
Type:
Location: 9928 - 11013 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_11
Type: CAZyme
Location: 11145 - 12053 (+)
Type: CAZyme
Location: 11145 - 12053 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_12
Type: CAZyme
Location: 12487 - 13653 (+)
Type: CAZyme
Location: 12487 - 13653 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_13
Type:
Location: 13665 - 14867 (+)
Type:
Location: 13665 - 14867 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_673_14
Type: TC
Location: 14827 - 16257 (+)
Type: TC
Location: 14827 - 16257 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.