Cluster: ShaoY_2019_ERR3405992_bin.8_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_01280
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_9138 | ShaoY_2019_ERR3405992_bin.8_k141_9138_48 | 39729 | 41237 | + | 4.C.1.1.4 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_9138 | ShaoY_2019_ERR3405992_bin.8_k141_9138_49 | 41417 | 43135 | - | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_9138 | ShaoY_2019_ERR3405992_bin.8_k141_9138_50 | 43367 | 44995 | + | GH13_31 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_9138 | ShaoY_2019_ERR3405992_bin.8_k141_9138_51 | 45076 | 46587 | + | HTH_AraC |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_9138 | ShaoY_2019_ERR3405992_bin.8_k141_9138_52 | 46597 | 48303 | + | 8.A.59.2.1 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_9138 | ShaoY_2019_ERR3405992_bin.8_k141_9138_53 | 48513 | 50210 | + | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_9138 | ShaoY_2019_ERR3405992_bin.8_k141_9138_54 | 50279 | 51193 | + | 3.A.1.1.9 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_9138 | ShaoY_2019_ERR3405992_bin.8_k141_9138_55 | 51210 | 52103 | + | 3.A.1.1.9 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_9138 | ShaoY_2019_ERR3405992_bin.8_k141_9138_56 | 52128 | 54530 | + | GH31_15 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9138_48
Type: TC
Location: 39729 - 41237 (+)
Type: TC
Location: 39729 - 41237 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9138_49
Type: pfam
Location: 41417 - 43135 (-)
Type: pfam
Location: 41417 - 43135 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9138_50
Type: CAZyme
Location: 43367 - 44995 (+)
Type: CAZyme
Location: 43367 - 44995 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9138_51
Type: TF
Location: 45076 - 46587 (+)
Type: TF
Location: 45076 - 46587 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9138_52
Type: TC
Location: 46597 - 48303 (+)
Type: TC
Location: 46597 - 48303 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9138_53
Type: TC
Location: 48513 - 50210 (+)
Type: TC
Location: 48513 - 50210 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9138_54
Type: TC
Location: 50279 - 51193 (+)
Type: TC
Location: 50279 - 51193 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9138_55
Type: TC
Location: 51210 - 52103 (+)
Type: TC
Location: 51210 - 52103 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9138_56
Type: CAZyme
Location: 52128 - 54530 (+)
Type: CAZyme
Location: 52128 - 54530 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.