Cluster: ShaoY_2019_ERR3405992_bin.8_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_00097
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_13 | 13230 | 15692 | + | GH35 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_14 | 15791 | 17125 | - | GH32 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_15 | 17194 | 18294 | - | 3.A.1.1.27 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_16 | 18301 | 19152 | - | 3.A.1.1.20 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_2466 | ShaoY_2019_ERR3405992_bin.8_k141_2466_17 | 19124 | 20023 | - | 3.A.1.1.20 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_13
Type: CAZyme
Location: 13230 - 15692 (+)
Type: CAZyme
Location: 13230 - 15692 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_14
Type: CAZyme
Location: 15791 - 17125 (-)
Type: CAZyme
Location: 15791 - 17125 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_15
Type: TC
Location: 17194 - 18294 (-)
Type: TC
Location: 17194 - 18294 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_16
Type: TC
Location: 18301 - 19152 (-)
Type: TC
Location: 18301 - 19152 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_2466_17
Type: TC
Location: 19124 - 20023 (-)
Type: TC
Location: 19124 - 20023 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.