Cluster: ShaoY_2019_ERR3405992_bin.8_CGC48
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_02079
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_28175 | ShaoY_2019_ERR3405992_bin.8_k141_28175_8 | 3167 | 3811 | - | 3.A.1.25.5 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_28175 | ShaoY_2019_ERR3405992_bin.8_k141_28175_9 | 3920 | 4804 | - | HTH_1 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_28175 | ShaoY_2019_ERR3405992_bin.8_k141_28175_10 | 4946 | 5512 | + | Chromate_transp |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_28175 | ShaoY_2019_ERR3405992_bin.8_k141_28175_11 | 5509 | 6069 | + | 2.A.51.1.6 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_28175 | ShaoY_2019_ERR3405992_bin.8_k141_28175_12 | 6237 | 8399 | + | GH112 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_28175_8
Type: TC
Location: 3167 - 3811 (-)
Type: TC
Location: 3167 - 3811 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_28175_9
Type: TF
Location: 3920 - 4804 (-)
Type: TF
Location: 3920 - 4804 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_28175_10
Type: pfam
Location: 4946 - 5512 (+)
Type: pfam
Location: 4946 - 5512 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_28175_11
Type: TC
Location: 5509 - 6069 (+)
Type: TC
Location: 5509 - 6069 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_28175_12
Type: CAZyme
Location: 6237 - 8399 (+)
Type: CAZyme
Location: 6237 - 8399 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.