Cluster: ShaoY_2019_ERR3405992_bin.8_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_02978
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_14 | 14053 | 16080 | - | GH120 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_15 | 16409 | 16783 | + | DUF3783 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_16 | 16890 | 17588 | + | 3.A.1.122.2 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_17 | 17624 | 19363 | + | HlyD_3 | HlyD_D23 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_14827 | ShaoY_2019_ERR3405992_bin.8_k141_14827_18 | 19380 | 20618 | + | 3.A.1.122.2 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_14
Type: CAZyme
Location: 14053 - 16080 (-)
Type: CAZyme
Location: 14053 - 16080 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_15
Type: pfam
Location: 16409 - 16783 (+)
Type: pfam
Location: 16409 - 16783 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_16
Type: TC
Location: 16890 - 17588 (+)
Type: TC
Location: 16890 - 17588 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_17
Type: pfam
Location: 17624 - 19363 (+)
Type: pfam
Location: 17624 - 19363 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_18
Type: TC
Location: 19380 - 20618 (+)
Type: TC
Location: 19380 - 20618 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.