Cluster: ShaoY_2019_ERR3405992_bin.8_CGC34
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_00049
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_22 | 22480 | 23928 | - | 2.A.66.2.16 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_23 | 24323 | 25348 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_24 | 25345 | 26361 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_25 | 26371 | 27369 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_26 | 27390 | 28493 | - | GT4 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_27 | 28490 | 29887 | - | Wzy_C |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_28 | 29875 | 31125 | - | GT4 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_29 | 31162 | 31863 | - | 9.B.18.1.3 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_30 | 31874 | 32953 | - | GT2 |
| STP | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_31 | 32961 | 34169 | - | Aminotran_1_2 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_18569 | ShaoY_2019_ERR3405992_bin.8_k141_18569_32 | 34183 | 36162 | - | 9.B.18.2.1 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_22
Type: TC
Location: 22480 - 23928 (-)
Type: TC
Location: 22480 - 23928 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_23
Type: CAZyme
Location: 24323 - 25348 (-)
Type: CAZyme
Location: 24323 - 25348 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_24
Type: CAZyme
Location: 25345 - 26361 (-)
Type: CAZyme
Location: 25345 - 26361 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_25
Type: CAZyme
Location: 26371 - 27369 (-)
Type: CAZyme
Location: 26371 - 27369 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_26
Type: CAZyme
Location: 27390 - 28493 (-)
Type: CAZyme
Location: 27390 - 28493 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_27
Type: pfam
Location: 28490 - 29887 (-)
Type: pfam
Location: 28490 - 29887 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_28
Type: CAZyme
Location: 29875 - 31125 (-)
Type: CAZyme
Location: 29875 - 31125 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_29
Type: TC
Location: 31162 - 31863 (-)
Type: TC
Location: 31162 - 31863 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_30
Type: CAZyme
Location: 31874 - 32953 (-)
Type: CAZyme
Location: 31874 - 32953 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_31
Type: STP
Location: 32961 - 34169 (-)
Type: STP
Location: 32961 - 34169 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_18569_32
Type: TC
Location: 34183 - 36162 (-)
Type: TC
Location: 34183 - 36162 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.