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Cluster: ShaoY_2019_ERR3405992_bin.8_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405992_bin.8_k141_14827 ShaoY_2019_ERR3405992_bin.8_k141_14827_22 24092 24751 + 1.C.113.1.2
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_14827 ShaoY_2019_ERR3405992_bin.8_k141_14827_23 24870 26264 - GH32
TC ShaoY_2019_ERR3405992_bin.8_k141_14827 ShaoY_2019_ERR3405992_bin.8_k141_14827_24 26332 27171 - 3.A.1.1.41
TC ShaoY_2019_ERR3405992_bin.8_k141_14827 ShaoY_2019_ERR3405992_bin.8_k141_14827_25 27168 28052 - 3.A.1.1.32
STP ShaoY_2019_ERR3405992_bin.8_k141_14827 ShaoY_2019_ERR3405992_bin.8_k141_14827_26 28127 29425 - SBP_bac_1
TF ShaoY_2019_ERR3405992_bin.8_k141_14827 ShaoY_2019_ERR3405992_bin.8_k141_14827_27 29615 31222 - HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3405992_bin.8_k141_14827 ShaoY_2019_ERR3405992_bin.8_k141_14827_28 31219 33018 - 8.A.59.2.1
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_22
Type: TC
Location: 24092 - 24751 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_23
Type: CAZyme
Location: 24870 - 26264 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_24
Type: TC
Location: 26332 - 27171 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_25
Type: TC
Location: 27168 - 28052 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_26
Type: STP
Location: 28127 - 29425 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_27
Type: TF
Location: 29615 - 31222 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_14827_28
Type: TC
Location: 31219 - 33018 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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