Cluster: ShaoY_2019_ERR3405992_bin.8_CGC8
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_00663
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_1 | 3 | 2015 | + | 3.D.1.4.2 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_2 | 2012 | 2875 | + | 3.D.1.4.2 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_3 | 2894 | 3331 | + | 3.D.1.4.2 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_4 | 3337 | 3684 | + | 3.D.1.4.2 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_5 | 3691 | 4770 | + | 3.D.1.4.2 |
| STP | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_6 | 4790 | 5353 | + | Fer4 | Fer4 | Fer4 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_7 | 5586 | 6974 | + | 2.A.2.1.1 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_8 | 7018 | 9117 | + | GH3 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_9 | 9240 | 10511 | + | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_4955 | ShaoY_2019_ERR3405992_bin.8_k141_4955_10 | 10508 | 12658 | + | CBM67 | GH78 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_1
Type: TC
Location: 3 - 2015 (+)
Type: TC
Location: 3 - 2015 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_2
Type: TC
Location: 2012 - 2875 (+)
Type: TC
Location: 2012 - 2875 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_3
Type: TC
Location: 2894 - 3331 (+)
Type: TC
Location: 2894 - 3331 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_4
Type: TC
Location: 3337 - 3684 (+)
Type: TC
Location: 3337 - 3684 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_5
Type: TC
Location: 3691 - 4770 (+)
Type: TC
Location: 3691 - 4770 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_6
Type: STP
Location: 4790 - 5353 (+)
Type: STP
Location: 4790 - 5353 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_7
Type: TC
Location: 5586 - 6974 (+)
Type: TC
Location: 5586 - 6974 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_8
Type: CAZyme
Location: 7018 - 9117 (+)
Type: CAZyme
Location: 7018 - 9117 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_9
Type: TF
Location: 9240 - 10511 (+)
Type: TF
Location: 9240 - 10511 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_4955_10
Type: CAZyme
Location: 10508 - 12658 (+)
Type: CAZyme
Location: 10508 - 12658 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.