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Cluster: ShaoY_2019_ERR3405992_bin.8_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405992_bin.8_k141_9807 ShaoY_2019_ERR3405992_bin.8_k141_9807_21 21128 22510 + 3.A.1.1.41
TC ShaoY_2019_ERR3405992_bin.8_k141_9807 ShaoY_2019_ERR3405992_bin.8_k141_9807_22 22525 23403 + 3.A.1.1.20
TC ShaoY_2019_ERR3405992_bin.8_k141_9807 ShaoY_2019_ERR3405992_bin.8_k141_9807_23 23416 24237 + 3.A.1.1.39
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_9807 ShaoY_2019_ERR3405992_bin.8_k141_9807_24 24304 26691 + GH31_15
TF ShaoY_2019_ERR3405992_bin.8_k141_9807 ShaoY_2019_ERR3405992_bin.8_k141_9807_25 26814 27758 - HTH_AraC | HTH_AraC
CAZyme ShaoY_2019_ERR3405992_bin.8_k141_9807 ShaoY_2019_ERR3405992_bin.8_k141_9807_26 28025 29842 + GH2
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9807_21
Type: TC
Location: 21128 - 22510 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9807_22
Type: TC
Location: 22525 - 23403 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9807_23
Type: TC
Location: 23416 - 24237 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9807_24
Type: CAZyme
Location: 24304 - 26691 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9807_25
Type: TF
Location: 26814 - 27758 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_9807_26
Type: CAZyme
Location: 28025 - 29842 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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