Cluster: ShaoY_2019_ERR3405992_bin.8_CGC21
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_00007
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_13812 | ShaoY_2019_ERR3405992_bin.8_k141_13812_1 | 1 | 1044 | - | GT2 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_13812 | ShaoY_2019_ERR3405992_bin.8_k141_13812_2 | 1084 | 2040 | - | PS_pyruv_trans |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_13812 | ShaoY_2019_ERR3405992_bin.8_k141_13812_3 | 2060 | 3256 | - | GT2 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_13812 | ShaoY_2019_ERR3405992_bin.8_k141_13812_4 | 3285 | 4451 | - | UDPG_MGDP_dh | NAD_Gly3P_dh_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_13812 | ShaoY_2019_ERR3405992_bin.8_k141_13812_5 | 4508 | 5554 | - | GT2 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_13812 | ShaoY_2019_ERR3405992_bin.8_k141_13812_6 | 5560 | 6732 | - | Glyphos_transf |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_13812 | ShaoY_2019_ERR3405992_bin.8_k141_13812_7 | 6735 | 7685 | - | GT2 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_13812 | ShaoY_2019_ERR3405992_bin.8_k141_13812_8 | 7722 | 8546 | - | 3.A.1.104.1 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_13812 | ShaoY_2019_ERR3405992_bin.8_k141_13812_9 | 8557 | 9360 | - | 3.A.1.104.1 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13812_1
Type: CAZyme
Location: 1 - 1044 (-)
Type: CAZyme
Location: 1 - 1044 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13812_2
Type: pfam
Location: 1084 - 2040 (-)
Type: pfam
Location: 1084 - 2040 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13812_3
Type: CAZyme
Location: 2060 - 3256 (-)
Type: CAZyme
Location: 2060 - 3256 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13812_4
Type: pfam
Location: 3285 - 4451 (-)
Type: pfam
Location: 3285 - 4451 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13812_5
Type: CAZyme
Location: 4508 - 5554 (-)
Type: CAZyme
Location: 4508 - 5554 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13812_6
Type: pfam
Location: 5560 - 6732 (-)
Type: pfam
Location: 5560 - 6732 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13812_7
Type: CAZyme
Location: 6735 - 7685 (-)
Type: CAZyme
Location: 6735 - 7685 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13812_8
Type: TC
Location: 7722 - 8546 (-)
Type: TC
Location: 7722 - 8546 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13812_9
Type: TC
Location: 8557 - 9360 (-)
Type: TC
Location: 8557 - 9360 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.