Cluster: ShaoY_2019_ERR3405992_bin.8_CGC52
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_00130
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_31565 | ShaoY_2019_ERR3405992_bin.8_k141_31565_7 | 8182 | 9138 | - | 3.A.1.144.2 |
| TF | ShaoY_2019_ERR3405992_bin.8_k141_31565 | ShaoY_2019_ERR3405992_bin.8_k141_31565_8 | 9135 | 10277 | - | HTH_3 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_31565 | ShaoY_2019_ERR3405992_bin.8_k141_31565_9 | 10436 | 11797 | - | 2.A.66.1.32 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_31565 | ShaoY_2019_ERR3405992_bin.8_k141_31565_10 | 12025 | 13686 | - | GH13_29 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_31565 | ShaoY_2019_ERR3405992_bin.8_k141_31565_11 | 13755 | 15731 | - | 4.A.1.2.13 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_31565_7
Type: TC
Location: 8182 - 9138 (-)
Type: TC
Location: 8182 - 9138 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_31565_8
Type: TF
Location: 9135 - 10277 (-)
Type: TF
Location: 9135 - 10277 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_31565_9
Type: TC
Location: 10436 - 11797 (-)
Type: TC
Location: 10436 - 11797 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_31565_10
Type: CAZyme
Location: 12025 - 13686 (-)
Type: CAZyme
Location: 12025 - 13686 (-)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_31565_11
Type: TC
Location: 13755 - 15731 (-)
Type: TC
Location: 13755 - 15731 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.