Cluster: ShaoY_2019_ERR3405992_bin.8_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405992_bin.8
- CGC Family ID: CGCFAM_03051
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_4 | 2466 | 3374 | + | 3.A.1.148.3 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_5 | 3562 | 5979 | + | GH39 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_6 | 6148 | 7065 | + | AP_endonuc_2 |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_7 | 7089 | 8135 | + | GH179 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_8 | 8253 | 8525 | + | RelB |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_9 | 8518 | 8784 | + | YoeB_toxin |
| CAZyme | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_10 | 9067 | 10170 | + | GH179 |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_11 | 10244 | 10678 | + | CGDB |
| pfam | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_12 | 10694 | 11680 | + | AP_endonuc_2 |
| TC | ShaoY_2019_ERR3405992_bin.8_k141_13085 | ShaoY_2019_ERR3405992_bin.8_k141_13085_13 | 11790 | 13190 | + | 2.A.2.3.2 |
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_4
Type: TC
Location: 2466 - 3374 (+)
Type: TC
Location: 2466 - 3374 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_5
Type: CAZyme
Location: 3562 - 5979 (+)
Type: CAZyme
Location: 3562 - 5979 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_6
Type: pfam
Location: 6148 - 7065 (+)
Type: pfam
Location: 6148 - 7065 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_7
Type: CAZyme
Location: 7089 - 8135 (+)
Type: CAZyme
Location: 7089 - 8135 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_8
Type: pfam
Location: 8253 - 8525 (+)
Type: pfam
Location: 8253 - 8525 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_9
Type: pfam
Location: 8518 - 8784 (+)
Type: pfam
Location: 8518 - 8784 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_10
Type: CAZyme
Location: 9067 - 10170 (+)
Type: CAZyme
Location: 9067 - 10170 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_11
Type: pfam
Location: 10244 - 10678 (+)
Type: pfam
Location: 10244 - 10678 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_12
Type: pfam
Location: 10694 - 11680 (+)
Type: pfam
Location: 10694 - 11680 (+)
Gene ID: ShaoY_2019_ERR3405992_bin.8_k141_13085_13
Type: TC
Location: 11790 - 13190 (+)
Type: TC
Location: 11790 - 13190 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.