y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00036742m |
Family | GH17 |
Protein Properties | Length: 434 Molecular Weight: 46030.2 Isoelectric Point: 5.1603 |
Chromosome | Chromosome/Scaffold: 000705 Start: 3535 End: 5704 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 63 | 380 | 0 |
GINYGQIANDLPDPTRVAGLLQSMNVNKVKLYDADPRVLTAFANTGVEFIIAVGNENLQTMAASPAAARQWVATHVQPYIPATRVTCVTVGNEVFSSNDN VMMSSLLPAMKAVYAALGDLGLGSQVTVSSAHSVNVLATSFPPSSGAFREDLAEYIQPILDFHGQTGSPFLINAYPFFAYKANPGSVSLPYVLFEPNPGV RDPNTNLSYDNMLYAQIDAVYAAMKAMGHTDVGVRISETGWPSKGDEDETGATVQNAAAYNGNLMQRIAMNQGTPLKPNVPIDVYVFALFNEDMKPGPTS ERNYGLFYPNGSPVYAIN |
Full Sequence |
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Protein Sequence Length: 434 Download |
GGGCTALKCE RNQLRSPRPG EEQQGGGEAE MGLRHRASSL LLLSLALGLA VALVSVSAQQ 60 KFGINYGQIA NDLPDPTRVA GLLQSMNVNK VKLYDADPRV LTAFANTGVE FIIAVGNENL 120 QTMAASPAAA RQWVATHVQP YIPATRVTCV TVGNEVFSSN DNVMMSSLLP AMKAVYAALG 180 DLGLGSQVTV SSAHSVNVLA TSFPPSSGAF REDLAEYIQP ILDFHGQTGS PFLINAYPFF 240 AYKANPGSVS LPYVLFEPNP GVRDPNTNLS YDNMLYAQID AVYAAMKAMG HTDVGVRISE 300 TGWPSKGDED ETGATVQNAA AYNGNLMQRI AMNQGTPLKP NVPIDVYVFA LFNEDMKPGP 360 TSERNYGLFY PNGSPVYAIN AGSGSGSGSG GSLNPYYTSM FSSSSKLAVS TTFLTERVIL 420 LLLLQAIVIF LQS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-6 | 138 | 372 | 237 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 6.0e-99 | 63 | 380 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF85574.1 | 0 | 26 | 433 | 2 | 412 | unknown [Zea mays] |
GenBank | EEC71847.1 | 0 | 56 | 413 | 25 | 382 | hypothetical protein OsI_04517 [Oryza sativa Indica Group] |
RefSeq | NP_001044874.1 | 0 | 56 | 411 | 25 | 380 | Os01g0860800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146374.1 | 0 | 31 | 430 | 1 | 399 | hypothetical protein LOC100279952 [Zea mays] |
RefSeq | XP_002456675.1 | 0 | 31 | 433 | 1 | 403 | hypothetical protein SORBIDRAFT_03g040630 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 63 | 379 | 2 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 63 | 379 | 2 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 63 | 379 | 2 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 63 | 380 | 3 | 314 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 63 | 380 | 3 | 314 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |