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Genome Details

Selected Rep_genome_ID: HRGMv2_0360
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola mediterraneensis_A
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_0360 4,415,468 99.25% 0.497% NA NA HRGM
MGYG000004479 3,712,458 99.18% 1.7% Israel Asia UHGG
Rep_533 3,307,756 95.0041% 0.273632% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0360_CGC45 CGCFAM_00001 Yes 3 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0360_CGC49 CGCFAM_00001 Yes 5 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0360_CGC14 CGCFAM_00005 Yes 16 10
HRGMv2_0360_CGC18 CGCFAM_00025 Yes 11 2 pectin/alpha-glucan
HRGMv2_0360_CGC37 CGCFAM_00082 Yes 7 4 beta-mannan
HRGMv2_0360_CGC34 CGCFAM_00164 Yes 5 3
HRGMv2_0360_CGC28 CGCFAM_00180 Yes 7 4
HRGMv2_0360_CGC57 CGCFAM_00273 Yes 24 19 xylan
HRGMv2_0360_CGC59 CGCFAM_00316 Yes 11 2
HRGMv2_0360_CGC26 CGCFAM_00320 Yes 9 2
HRGMv2_0360_CGC32 CGCFAM_00352 Yes 6 1
HRGMv2_0360_CGC31 CGCFAM_00360 Yes 7 4 host glycan
HRGMv2_0360_CGC17 CGCFAM_00379 Yes 3 1
HRGMv2_0360_CGC43 CGCFAM_00388 Yes 5 3
HRGMv2_0360_CGC58 CGCFAM_00743 Yes 7 1
HRGMv2_0360_CGC61 CGCFAM_00755 Yes 5 1
HRGMv2_0360_CGC36 CGCFAM_00981 Yes 4 3
PUL0101_HRGMv2_0360_C0 CGCFAM_01071 Yes 15 1 host glycan
PUL0104_HRGMv2_0360_C0 CGCFAM_01071 Yes 26 2 host glycan
HRGMv2_0360_CGC13 CGCFAM_01072 Yes 4 1
HRGMv2_0360_CGC16 CGCFAM_01113 Yes 3 1
HRGMv2_0360_CGC63 CGCFAM_01220 Yes 6 1
HRGMv2_0360_CGC5 CGCFAM_01308 Yes 9 1
HRGMv2_0360_CGC55 CGCFAM_01378 Yes 13 7
HRGMv2_0360_CGC29 CGCFAM_01491 Yes 19 9
Top CAZyme Families