Cluster: HRGMv2_0360_CGC14
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00005
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_719 | 840344 | 841021 | - | 9.B.18.1.3 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_720 | 841018 | 842139 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_721 | 842176 | 843474 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_722 | 843495 | 844730 | - | GT4 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_723 | 844727 | 845866 | - | GT4 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_724 | 845863 | 846864 | - | Acyl_transf_3 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_725 | 846872 | 848167 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_726 | 848170 | 849168 | - | GT2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_727 | 849179 | 850198 | - | GT2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_728 | 850204 | 851073 | - | GT14 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_729 | 851086 | 852009 | - | GT2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_730 | 852013 | 853140 | - | GT4 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_731 | 853168 | 854307 | - | Acyl_transf_3 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_732 | 854309 | 855280 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_733 | 855348 | 856322 | - | GT2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_734 | 856328 | 857191 | - | GT14 |
Gene ID: HRGMv2_0360_1_719
Type: TC
Location: 840344 - 841021 (-)
Type: TC
Location: 840344 - 841021 (-)
Gene ID: HRGMv2_0360_1_720
Type: CAZyme
Location: 841018 - 842139 (-)
Type: CAZyme
Location: 841018 - 842139 (-)
Gene ID: HRGMv2_0360_1_721
Type:
Location: 842176 - 843474 (-)
Type:
Location: 842176 - 843474 (-)
Gene ID: HRGMv2_0360_1_722
Type: CAZyme
Location: 843495 - 844730 (-)
Type: CAZyme
Location: 843495 - 844730 (-)
Gene ID: HRGMv2_0360_1_723
Type: CAZyme
Location: 844727 - 845866 (-)
Type: CAZyme
Location: 844727 - 845866 (-)
Gene ID: HRGMv2_0360_1_724
Type: pfam
Location: 845863 - 846864 (-)
Type: pfam
Location: 845863 - 846864 (-)
Gene ID: HRGMv2_0360_1_725
Type:
Location: 846872 - 848167 (-)
Type:
Location: 846872 - 848167 (-)
Gene ID: HRGMv2_0360_1_726
Type: CAZyme
Location: 848170 - 849168 (-)
Type: CAZyme
Location: 848170 - 849168 (-)
Gene ID: HRGMv2_0360_1_727
Type: CAZyme
Location: 849179 - 850198 (-)
Type: CAZyme
Location: 849179 - 850198 (-)
Gene ID: HRGMv2_0360_1_728
Type: CAZyme
Location: 850204 - 851073 (-)
Type: CAZyme
Location: 850204 - 851073 (-)
Gene ID: HRGMv2_0360_1_729
Type: CAZyme
Location: 851086 - 852009 (-)
Type: CAZyme
Location: 851086 - 852009 (-)
Gene ID: HRGMv2_0360_1_730
Type: CAZyme
Location: 852013 - 853140 (-)
Type: CAZyme
Location: 852013 - 853140 (-)
Gene ID: HRGMv2_0360_1_731
Type: pfam
Location: 853168 - 854307 (-)
Type: pfam
Location: 853168 - 854307 (-)
Gene ID: HRGMv2_0360_1_732
Type:
Location: 854309 - 855280 (-)
Type:
Location: 854309 - 855280 (-)
Gene ID: HRGMv2_0360_1_733
Type: CAZyme
Location: 855348 - 856322 (-)
Type: CAZyme
Location: 855348 - 856322 (-)
Gene ID: HRGMv2_0360_1_734
Type: CAZyme
Location: 856328 - 857191 (-)
Type: CAZyme
Location: 856328 - 857191 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.