Cluster: HRGMv2_0360_CGC16
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_01113
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_941 | 1088801 | 1089502 | + | 1.A.14.2.2 |
| STP | HRGMv2_0360_1 | HRGMv2_0360_1_942 | 1089587 | 1090780 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_943 | 1091344 | 1094313 | - | GH3 |
Gene ID: HRGMv2_0360_1_941
Type: TC
Location: 1088801 - 1089502 (+)
Type: TC
Location: 1088801 - 1089502 (+)
Gene ID: HRGMv2_0360_1_942
Type: STP
Location: 1089587 - 1090780 (+)
Type: STP
Location: 1089587 - 1090780 (+)
Gene ID: HRGMv2_0360_1_943
Type: CAZyme
Location: 1091344 - 1094313 (-)
Type: CAZyme
Location: 1091344 - 1094313 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.