Cluster: HRGMv2_0360_CGC58
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00743
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2784 | 3407329 | 3408198 | + | 2.A.7.3.2 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_2785 | 3408325 | 3409563 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2786 | 3409577 | 3411190 | + | 1.B.9.4.2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2787 | 3411256 | 3412416 | - | DUF4421 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2788 | 3412432 | 3413421 | - | GH179 |
| STP | HRGMv2_0360_1 | HRGMv2_0360_1_2789 | 3413433 | 3414257 | - | SBP_bac_3 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2790 | 3414257 | 3416344 | - | 1.B.14.15.2 |
Gene ID: HRGMv2_0360_1_2784
Type: TC
Location: 3407329 - 3408198 (+)
Type: TC
Location: 3407329 - 3408198 (+)
Gene ID: HRGMv2_0360_1_2785
Type:
Location: 3408325 - 3409563 (+)
Type:
Location: 3408325 - 3409563 (+)
Gene ID: HRGMv2_0360_1_2786
Type: TC
Location: 3409577 - 3411190 (+)
Type: TC
Location: 3409577 - 3411190 (+)
Gene ID: HRGMv2_0360_1_2787
Type: pfam
Location: 3411256 - 3412416 (-)
Type: pfam
Location: 3411256 - 3412416 (-)
Gene ID: HRGMv2_0360_1_2788
Type: CAZyme
Location: 3412432 - 3413421 (-)
Type: CAZyme
Location: 3412432 - 3413421 (-)
Gene ID: HRGMv2_0360_1_2789
Type: STP
Location: 3413433 - 3414257 (-)
Type: STP
Location: 3413433 - 3414257 (-)
Gene ID: HRGMv2_0360_1_2790
Type: TC
Location: 3414257 - 3416344 (-)
Type: TC
Location: 3414257 - 3416344 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.