Cluster: HRGMv2_0360_CGC17
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00379
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_954 | 1105463 | 1108474 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_955 | 1108513 | 1110156 | + | SusD-like_3 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_956 | 1110232 | 1111755 | + | GH136 |
Gene ID: HRGMv2_0360_1_954
Type: TC
Location: 1105463 - 1108474 (+)
Type: TC
Location: 1105463 - 1108474 (+)
Gene ID: HRGMv2_0360_1_955
Type: pfam
Location: 1108513 - 1110156 (+)
Type: pfam
Location: 1108513 - 1110156 (+)
Gene ID: HRGMv2_0360_1_956
Type: CAZyme
Location: 1110232 - 1111755 (+)
Type: CAZyme
Location: 1110232 - 1111755 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.