Cluster: HRGMv2_0360_CGC57
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 19
- Substrate: xylan
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00273
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2513 | 3068893 | 3071058 | + | GH10 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2514 | 3071301 | 3073817 | + | GH115 |
| sulfatase | HRGMv2_0360_1 | HRGMv2_0360_1_2515 | 3073827 | 3075152 | + | S1_8 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2516 | 3075248 | 3076960 | - | CBM91 | GH43_12 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2517 | 3077305 | 3078174 | + | CE1 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2518 | 3078194 | 3080644 | + | GH95 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2519 | 3080681 | 3082288 | + | CBM91 | GH43_10 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2520 | 3082307 | 3084712 | + | GH146 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2521 | 3084815 | 3086893 | + | Redoxin | Thioredoxin_8 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2522 | 3086962 | 3088923 | + | GH97 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2523 | 3088940 | 3090325 | + | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2524 | 3090367 | 3091701 | + | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2525 | 3091743 | 3094142 | + | GH31_4 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2526 | 3094139 | 3095548 | + | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2527 | 3095565 | 3098243 | + | GH31_4 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2528 | 3098291 | 3099157 | + | CE6 |
| TF | HRGMv2_0360_1 | HRGMv2_0360_1_2529 | 3099216 | 3103313 | - | HTH_AraC |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2530 | 3103661 | 3105292 | + | CE20 | CE20 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2531 | 3105295 | 3106791 | + | 2.A.2.3.4 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2532 | 3106811 | 3107959 | + | GH10 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2533 | 3108008 | 3108985 | + | GH43_1 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2534 | 3108978 | 3110990 | + | GH67 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2535 | 3111192 | 3113648 | - | 1.B.14.8.2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2536 | 3113778 | 3114974 | + | CE1 |
Gene ID: HRGMv2_0360_1_2513
Type: CAZyme
Location: 3068893 - 3071058 (+)
Type: CAZyme
Location: 3068893 - 3071058 (+)
Gene ID: HRGMv2_0360_1_2514
Type: CAZyme
Location: 3071301 - 3073817 (+)
Type: CAZyme
Location: 3071301 - 3073817 (+)
Gene ID: HRGMv2_0360_1_2515
Type: sulfatase
Location: 3073827 - 3075152 (+)
Type: sulfatase
Location: 3073827 - 3075152 (+)
Gene ID: HRGMv2_0360_1_2516
Type: CAZyme
Location: 3075248 - 3076960 (-)
Type: CAZyme
Location: 3075248 - 3076960 (-)
Gene ID: HRGMv2_0360_1_2517
Type: CAZyme
Location: 3077305 - 3078174 (+)
Type: CAZyme
Location: 3077305 - 3078174 (+)
Gene ID: HRGMv2_0360_1_2518
Type: CAZyme
Location: 3078194 - 3080644 (+)
Type: CAZyme
Location: 3078194 - 3080644 (+)
Gene ID: HRGMv2_0360_1_2519
Type: CAZyme
Location: 3080681 - 3082288 (+)
Type: CAZyme
Location: 3080681 - 3082288 (+)
Gene ID: HRGMv2_0360_1_2520
Type: CAZyme
Location: 3082307 - 3084712 (+)
Type: CAZyme
Location: 3082307 - 3084712 (+)
Gene ID: HRGMv2_0360_1_2521
Type: pfam
Location: 3084815 - 3086893 (+)
Type: pfam
Location: 3084815 - 3086893 (+)
Gene ID: HRGMv2_0360_1_2522
Type: CAZyme
Location: 3086962 - 3088923 (+)
Type: CAZyme
Location: 3086962 - 3088923 (+)
Gene ID: HRGMv2_0360_1_2523
Type: CAZyme
Location: 3088940 - 3090325 (+)
Type: CAZyme
Location: 3088940 - 3090325 (+)
Gene ID: HRGMv2_0360_1_2524
Type: CAZyme
Location: 3090367 - 3091701 (+)
Type: CAZyme
Location: 3090367 - 3091701 (+)
Gene ID: HRGMv2_0360_1_2525
Type: CAZyme
Location: 3091743 - 3094142 (+)
Type: CAZyme
Location: 3091743 - 3094142 (+)
Gene ID: HRGMv2_0360_1_2526
Type: CAZyme
Location: 3094139 - 3095548 (+)
Type: CAZyme
Location: 3094139 - 3095548 (+)
Gene ID: HRGMv2_0360_1_2527
Type: CAZyme
Location: 3095565 - 3098243 (+)
Type: CAZyme
Location: 3095565 - 3098243 (+)
Gene ID: HRGMv2_0360_1_2528
Type: CAZyme
Location: 3098291 - 3099157 (+)
Type: CAZyme
Location: 3098291 - 3099157 (+)
Gene ID: HRGMv2_0360_1_2529
Type: TF
Location: 3099216 - 3103313 (-)
Type: TF
Location: 3099216 - 3103313 (-)
Gene ID: HRGMv2_0360_1_2530
Type: CAZyme
Location: 3103661 - 3105292 (+)
Type: CAZyme
Location: 3103661 - 3105292 (+)
Gene ID: HRGMv2_0360_1_2531
Type: TC
Location: 3105295 - 3106791 (+)
Type: TC
Location: 3105295 - 3106791 (+)
Gene ID: HRGMv2_0360_1_2532
Type: CAZyme
Location: 3106811 - 3107959 (+)
Type: CAZyme
Location: 3106811 - 3107959 (+)
Gene ID: HRGMv2_0360_1_2533
Type: CAZyme
Location: 3108008 - 3108985 (+)
Type: CAZyme
Location: 3108008 - 3108985 (+)
Gene ID: HRGMv2_0360_1_2534
Type: CAZyme
Location: 3108978 - 3110990 (+)
Type: CAZyme
Location: 3108978 - 3110990 (+)
Gene ID: HRGMv2_0360_1_2535
Type: TC
Location: 3111192 - 3113648 (-)
Type: TC
Location: 3111192 - 3113648 (-)
Gene ID: HRGMv2_0360_1_2536
Type: CAZyme
Location: 3113778 - 3114974 (+)
Type: CAZyme
Location: 3113778 - 3114974 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0360_1_2518 | vegetarian > vegan | 1.04996 | 0.04599 |
| HRGMv2_0360_1_2536 | vegetarian > vegan | 1.56877 | 0.03127 |