Cluster: HRGMv2_0360_CGC29
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_01491
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1391 | 1640239 | 1643391 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1392 | 1643406 | 1645340 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1393 | 1645353 | 1646735 | + | BT_3987-like_N | BT_3987-like_N |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1394 | 1646817 | 1649384 | + | CBM32 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1395 | 1649472 | 1650953 | - | tRNA-synt_1e | DALR_2 | tRNA-synt_1g | CysS_C |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1396 | 1651051 | 1652991 | - | GH97 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1397 | 1653154 | 1654161 | - | GH43_5 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1398 | 1654261 | 1656162 | - | GH43_4 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_1399 | 1656229 | 1657998 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1400 | 1658073 | 1659824 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1401 | 1659861 | 1663055 | - | 1.B.14.6.1 |
| TF | HRGMv2_0360_1 | HRGMv2_0360_1_1402 | 1663540 | 1667739 | - | HTH_AraC |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1403 | 1667980 | 1669959 | + | GH51_2 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_1404 | 1670020 | 1670265 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1405 | 1670503 | 1673850 | - | GH2 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_1406 | 1673913 | 1674002 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1407 | 1674028 | 1676253 | - | GH92 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1408 | 1676274 | 1678535 | - | GH92 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1409 | 1678577 | 1680769 | - | GH92 |
Gene ID: HRGMv2_0360_1_1391
Type: TC
Location: 1640239 - 1643391 (+)
Type: TC
Location: 1640239 - 1643391 (+)
Gene ID: HRGMv2_0360_1_1392
Type: pfam
Location: 1643406 - 1645340 (+)
Type: pfam
Location: 1643406 - 1645340 (+)
Gene ID: HRGMv2_0360_1_1393
Type: pfam
Location: 1645353 - 1646735 (+)
Type: pfam
Location: 1645353 - 1646735 (+)
Gene ID: HRGMv2_0360_1_1394
Type: CAZyme
Location: 1646817 - 1649384 (+)
Type: CAZyme
Location: 1646817 - 1649384 (+)
Gene ID: HRGMv2_0360_1_1395
Type: pfam
Location: 1649472 - 1650953 (-)
Type: pfam
Location: 1649472 - 1650953 (-)
Gene ID: HRGMv2_0360_1_1396
Type: CAZyme
Location: 1651051 - 1652991 (-)
Type: CAZyme
Location: 1651051 - 1652991 (-)
Gene ID: HRGMv2_0360_1_1397
Type: CAZyme
Location: 1653154 - 1654161 (-)
Type: CAZyme
Location: 1653154 - 1654161 (-)
Gene ID: HRGMv2_0360_1_1398
Type: CAZyme
Location: 1654261 - 1656162 (-)
Type: CAZyme
Location: 1654261 - 1656162 (-)
Gene ID: HRGMv2_0360_1_1399
Type:
Location: 1656229 - 1657998 (-)
Type:
Location: 1656229 - 1657998 (-)
Gene ID: HRGMv2_0360_1_1400
Type: pfam
Location: 1658073 - 1659824 (-)
Type: pfam
Location: 1658073 - 1659824 (-)
Gene ID: HRGMv2_0360_1_1401
Type: TC
Location: 1659861 - 1663055 (-)
Type: TC
Location: 1659861 - 1663055 (-)
Gene ID: HRGMv2_0360_1_1402
Type: TF
Location: 1663540 - 1667739 (-)
Type: TF
Location: 1663540 - 1667739 (-)
Gene ID: HRGMv2_0360_1_1403
Type: CAZyme
Location: 1667980 - 1669959 (+)
Type: CAZyme
Location: 1667980 - 1669959 (+)
Gene ID: HRGMv2_0360_1_1404
Type:
Location: 1670020 - 1670265 (-)
Type:
Location: 1670020 - 1670265 (-)
Gene ID: HRGMv2_0360_1_1405
Type: CAZyme
Location: 1670503 - 1673850 (-)
Type: CAZyme
Location: 1670503 - 1673850 (-)
Gene ID: HRGMv2_0360_1_1406
Type:
Location: 1673913 - 1674002 (-)
Type:
Location: 1673913 - 1674002 (-)
Gene ID: HRGMv2_0360_1_1407
Type: CAZyme
Location: 1674028 - 1676253 (-)
Type: CAZyme
Location: 1674028 - 1676253 (-)
Gene ID: HRGMv2_0360_1_1408
Type: CAZyme
Location: 1676274 - 1678535 (-)
Type: CAZyme
Location: 1676274 - 1678535 (-)
Gene ID: HRGMv2_0360_1_1409
Type: CAZyme
Location: 1678577 - 1680769 (-)
Type: CAZyme
Location: 1678577 - 1680769 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.