Cluster: PUL0104_HRGMv2_0360_C0
🧬 Cluster Details
- Gene Count: 26
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_01071
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| peptidase | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1412 | 1684330 | 1685601 | - | U32.001 |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1413 | 1685669 | 1686676 | + | Dus |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1414 | 1686698 | 1687681 | - | PAP2 | PAP2_3 |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1415 | 1687672 | 1688682 | - | adh_short | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| TC | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1416 | 1688687 | 1689589 | - | 2.A.4.7.9 |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1417 | 1689739 | 1691889 | + | S1 | RNB | OB_RNB | OB_Dis3 | CSD2 |
| NULL(UNKNOWN) | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1418 | 1691979 | 1692110 | - | NULL(UNKNOWN) |
| NULL(UNKNOWN) | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1419 | 1692145 | 1693110 | + | NULL(UNKNOWN) |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1420 | 1693228 | 1694382 | - | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1421 | 1694412 | 1695221 | - | Aldolase_II |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1422 | 1695248 | 1696258 | - | RhaT |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1423 | 1696321 | 1697574 | - | RhaA |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1424 | 1697580 | 1699058 | - | FGGY_N | FGGY_C |
| TF | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1425 | 1699222 | 1700115 | + | HTH_AraC | HTH_AraC |
| CAZyme | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1426 | 1700124 | 1703615 | - | CBM67 | GH78 |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1428 | 1705662 | 1705982 | + | DUF3836 |
| TC | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1429 | 1706009 | 1706842 | + | 9.B.2.1.5 |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1431 | 1707538 | 1707990 | + | DUF2975 |
| TF | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1432 | 1708005 | 1708214 | + | HTH_3 |
| TF | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1434 | 1710060 | 1711268 | - | MarR |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1436 | 1712764 | 1713681 | + | DHDPS |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1437 | 1713693 | 1714880 | + | GlcNAc_2-epim |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1438 | 1714920 | 1716158 | + | MFS_1 | MFS_1 |
| pfam | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1439 | 1716174 | 1716620 | + | DUF386 |
| CAZyme | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1440 | 1716636 | 1718258 | + | CBM93 | GH33 |
| TC | PUL0104_HRGMv2_0360_C0 | HRGMv2_0360_1_1441 | 1718613 | 1721966 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0360_1_1412
Type: peptidase
Location: 1684330 - 1685601 (-)
Type: peptidase
Location: 1684330 - 1685601 (-)
Gene ID: HRGMv2_0360_1_1413
Type: pfam
Location: 1685669 - 1686676 (+)
Type: pfam
Location: 1685669 - 1686676 (+)
Gene ID: HRGMv2_0360_1_1414
Type: pfam
Location: 1686698 - 1687681 (-)
Type: pfam
Location: 1686698 - 1687681 (-)
Gene ID: HRGMv2_0360_1_1415
Type: pfam
Location: 1687672 - 1688682 (-)
Type: pfam
Location: 1687672 - 1688682 (-)
Gene ID: HRGMv2_0360_1_1416
Type: TC
Location: 1688687 - 1689589 (-)
Type: TC
Location: 1688687 - 1689589 (-)
Gene ID: HRGMv2_0360_1_1417
Type: pfam
Location: 1689739 - 1691889 (+)
Type: pfam
Location: 1689739 - 1691889 (+)
Gene ID: HRGMv2_0360_1_1418
Type: null
Location: 1691979 - 1692110 (-)
Type: null
Location: 1691979 - 1692110 (-)
Gene ID: HRGMv2_0360_1_1419
Type: null
Location: 1692145 - 1693110 (+)
Type: null
Location: 1692145 - 1693110 (+)
Gene ID: HRGMv2_0360_1_1420
Type: pfam
Location: 1693228 - 1694382 (-)
Type: pfam
Location: 1693228 - 1694382 (-)
Gene ID: HRGMv2_0360_1_1421
Type: pfam
Location: 1694412 - 1695221 (-)
Type: pfam
Location: 1694412 - 1695221 (-)
Gene ID: HRGMv2_0360_1_1422
Type: pfam
Location: 1695248 - 1696258 (-)
Type: pfam
Location: 1695248 - 1696258 (-)
Gene ID: HRGMv2_0360_1_1423
Type: pfam
Location: 1696321 - 1697574 (-)
Type: pfam
Location: 1696321 - 1697574 (-)
Gene ID: HRGMv2_0360_1_1424
Type: pfam
Location: 1697580 - 1699058 (-)
Type: pfam
Location: 1697580 - 1699058 (-)
Gene ID: HRGMv2_0360_1_1425
Type: TF
Location: 1699222 - 1700115 (+)
Type: TF
Location: 1699222 - 1700115 (+)
Gene ID: HRGMv2_0360_1_1426
Type: CAZyme
Location: 1700124 - 1703615 (-)
Type: CAZyme
Location: 1700124 - 1703615 (-)
Gene ID: HRGMv2_0360_1_1428
Type: pfam
Location: 1705662 - 1705982 (+)
Type: pfam
Location: 1705662 - 1705982 (+)
Gene ID: HRGMv2_0360_1_1429
Type: TC
Location: 1706009 - 1706842 (+)
Type: TC
Location: 1706009 - 1706842 (+)
Gene ID: HRGMv2_0360_1_1431
Type: pfam
Location: 1707538 - 1707990 (+)
Type: pfam
Location: 1707538 - 1707990 (+)
Gene ID: HRGMv2_0360_1_1432
Type: TF
Location: 1708005 - 1708214 (+)
Type: TF
Location: 1708005 - 1708214 (+)
Gene ID: HRGMv2_0360_1_1434
Type: TF
Location: 1710060 - 1711268 (-)
Type: TF
Location: 1710060 - 1711268 (-)
Gene ID: HRGMv2_0360_1_1436
Type: pfam
Location: 1712764 - 1713681 (+)
Type: pfam
Location: 1712764 - 1713681 (+)
Gene ID: HRGMv2_0360_1_1437
Type: pfam
Location: 1713693 - 1714880 (+)
Type: pfam
Location: 1713693 - 1714880 (+)
Gene ID: HRGMv2_0360_1_1438
Type: pfam
Location: 1714920 - 1716158 (+)
Type: pfam
Location: 1714920 - 1716158 (+)
Gene ID: HRGMv2_0360_1_1439
Type: pfam
Location: 1716174 - 1716620 (+)
Type: pfam
Location: 1716174 - 1716620 (+)
Gene ID: HRGMv2_0360_1_1440
Type: CAZyme
Location: 1716636 - 1718258 (+)
Type: CAZyme
Location: 1716636 - 1718258 (+)
Gene ID: HRGMv2_0360_1_1441
Type: TC
Location: 1718613 - 1721966 (+)
Type: TC
Location: 1718613 - 1721966 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Composition
Loading chart...
← Back to Cluster List