Cluster: HRGMv2_0360_CGC36
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00981
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1603 | 1928015 | 1931278 | - | 1.B.14.6.3 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1604 | 1931651 | 1933963 | + | GH20 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1605 | 1933990 | 1935987 | + | GH20 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1606 | 1936000 | 1939587 | + | GH2 |
Gene ID: HRGMv2_0360_1_1603
Type: TC
Location: 1928015 - 1931278 (-)
Type: TC
Location: 1928015 - 1931278 (-)
Gene ID: HRGMv2_0360_1_1604
Type: CAZyme
Location: 1931651 - 1933963 (+)
Type: CAZyme
Location: 1931651 - 1933963 (+)
Gene ID: HRGMv2_0360_1_1605
Type: CAZyme
Location: 1933990 - 1935987 (+)
Type: CAZyme
Location: 1933990 - 1935987 (+)
Gene ID: HRGMv2_0360_1_1606
Type: CAZyme
Location: 1936000 - 1939587 (+)
Type: CAZyme
Location: 1936000 - 1939587 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.