Cluster: HRGMv2_0360_CGC49
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2130 | 2596720 | 2598180 | + | 2.A.66.1.32 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_2131 | 2598447 | 2598650 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2132 | 2599287 | 2602514 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2133 | 2602528 | 2604552 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2134 | 2604857 | 2607292 | + | GH2 |
Gene ID: HRGMv2_0360_1_2130
Type: TC
Location: 2596720 - 2598180 (+)
Type: TC
Location: 2596720 - 2598180 (+)
Gene ID: HRGMv2_0360_1_2131
Type:
Location: 2598447 - 2598650 (+)
Type:
Location: 2598447 - 2598650 (+)
Gene ID: HRGMv2_0360_1_2132
Type: TC
Location: 2599287 - 2602514 (+)
Type: TC
Location: 2599287 - 2602514 (+)
Gene ID: HRGMv2_0360_1_2133
Type: pfam
Location: 2602528 - 2604552 (+)
Type: pfam
Location: 2602528 - 2604552 (+)
Gene ID: HRGMv2_0360_1_2134
Type: CAZyme
Location: 2604857 - 2607292 (+)
Type: CAZyme
Location: 2604857 - 2607292 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.